PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g030980.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 296aa    MW: 34320.3 Da    PI: 7.0119
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g030980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.3e-0872112145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg W + Ed + +++v+ +G+ +W++Ia++++ gR++    +rw+
   Csa16g030980.1  72 RGHWRPAEDAKPKELVAVYGPQNWNLIAEKLQ-GRSD---TLRWF 112
                      899*****************************.***9...55555 PP
2Myb_DNA-binding61.22.1e-19121164146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l++a+k++G++ W+ Iar ++ gRt++++k++w+ 
   Csa16g030980.1 121 RRAFTEEEEERLLQAHKLYGNK-WAMIARLFP-GRTDNSVKNHWHV 164
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.65767115IPR017930Myb domain
SuperFamilySSF466898.59E-2270162IPR009057Homeodomain-like
SMARTSM007170.008371117IPR001005SANT/Myb domain
PfamPF002495.4E-772113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-1873122IPR009057Homeodomain-like
CDDcd001673.18E-675113No hitNo description
PROSITE profilePS5129427.2116170IPR017930Myb domain
SMARTSM007172.6E-16120168IPR001005SANT/Myb domain
PfamPF002494.7E-16121163IPR001005SANT/Myb domain
CDDcd001675.42E-13123163No hitNo description
Gene3DG3DSA:1.10.10.607.3E-22123169IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSEDHLRLMD QISSSDHFSL NINNDQHLHR YPTSHREEEI RNSYLSDYSN CSKKDTADYG  60
SSGHSSKASV SRGHWRPAED AKPKELVAVY GPQNWNLIAE KLQGRSDTLR WFNQLDPRIN  120
RRAFTEEEEE RLLQAHKLYG NKWAMIARLF PGRTDNSVKN HWHVIMARKF REQSSTYRRR  180
KTVLPLKPLS KPNPHFFNDF DPTRLALTHL VTNDQKQLML PIPCFPGYDN GNESPLMVDM  240
FENEMMVGDY TAWTQEATTF DFSHQTGKSD QMFDRTSTVE KEPPFFDFLG LGTAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27701705108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g030980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2493080.0AF249308.1 Arabidopsis thaliana putative transcription factor (MYB105) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887243.21e-179LOW QUALITY PROTEIN: transcription factor MYB105
RefseqXP_006300946.21e-179LOW QUALITY PROTEIN: transcription factor MYB105
SwissprotQ9SEZ41e-173MY105_ARATH; Transcription factor MYB105
TrEMBLD7KXG81e-178D7KXG8_ARALL; MYB105
STRINGBostr.10273s0409.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-165myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]