PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g032820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 109aa    MW: 12308.1 Da    PI: 10.576
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g032820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.29.6e-0983102121
             AP2   1 sgykGVrwdkkrgrWvAeIrd 21 
                     ++y+GVr+++ +g+WvAeIr+
  Csa16g032820.1  83 KKYRGVRQRP-WGKWVAEIRC 102
                     59********.*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.8E-201106IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.104.0E-984104IPR001471AP2/ERF domain
PROSITE profilePS5103210.38984108IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-584102IPR016177DNA-binding domain
PfamPF008472.3E-484100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MKRIIRISFT DAEATDSSSD EEETENLGGG GSQTTRRRGK RLVKEIVIDP PDSADDKLAV  60
CKTRFKIRIP AEFLAAEKTK ERKKYRGVRQ RPWGKWVAEI RCASSRLL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g032820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471118.11e-68PREDICTED: ethylene-responsive transcription factor ERF070-like, partial
SwissprotQ9C9951e-47ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A178WNZ83e-45A0A178WNZ8_ARATH; CRF8
STRINGXP_010471118.14e-68(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.11e-30ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]