PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g035040.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 228aa    MW: 25677.5 Da    PI: 8.907
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g035040.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.71.1e-215199149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k ie + +rqvtfskRr g++KKA ELSvLC+a++ +i fs  +++y +
  Csa16g035040.1 51 KEIEVENRRQVTFSKRRSGLFKKAAELSVLCGAQIGIITFSRCDRIYSF 99
                    679999************************************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.63743103IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-2343113IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-2743102IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-204565IPR002100Transcription factor, MADS-box
PfamPF003194.6E-225399IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-206580IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-2080101IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVDVGEASTI TCLPPAKQKP LRNPNLLANQ KKETTPKKPR TTKGRQKIEI KEIEVENRRQ  60
VTFSKRRSGL FKKAAELSVL CGAQIGIITF SRCDRIYSFG NVDTLVDKYI RKTPVMLRTN  120
PGCDVAAGDE NHDGLMWWER AVESVAEEDM EEYKMALSLL RENLLTRISQ MGNDRTVENL  180
PAFPNEMAMA DWKLSNESLM ARNDRSYLGN DAGLDLAVPF MSPKPRQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g035040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471262.11e-170PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLR0ICD31e-130R0ICD3_9BRAS; Uncharacterized protein
STRINGXP_010471262.11e-169(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.11e-113M-type_MADS family protein