PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g035050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 260aa    MW: 28972.3 Da    PI: 5.107
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g035050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-1769120156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     s+y+G r+++ +grW+AeIrdp     +  r++lg+f tae+Aa+a++  +k+++g+
  Csa16g035050.1  69 SRYRGTRRRP-WGRWAAEIRDPI----KgVRVWLGTFNTAEDAARAYDLEAKRIRGA 120
                     78********.**********72....46*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-2269128IPR016177DNA-binding domain
PfamPF008474.4E-1169119IPR001471AP2/ERF domain
CDDcd000185.19E-3269128No hitNo description
Gene3DG3DSA:3.30.730.106.5E-3070128IPR001471AP2/ERF domain
SMARTSM003801.8E-3470133IPR001471AP2/ERF domain
PROSITE profilePS5103223.88170127IPR001471AP2/ERF domain
PRINTSPR003679.9E-117182IPR001471AP2/ERF domain
PRINTSPR003679.9E-1193109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MCGGAVISDY ITPSESDQEK IGRGKKSSWT IKAVFDCSIN DFKGDFEEIE SDFSSTRKRA  60
SSGSALQSSR YRGTRRRPWG RWAAEIRDPI KGVRVWLGTF NTAEDAARAY DLEAKRIRGA  120
KAKLNFPNEP SKRRKAEAKT VQLIQEKKKH EADLGLAMAS SVPSSSHTDF LWDENNADTL  180
LIDTQWLQDV IMGDAKKKQE LNDGEKEGNV NAVLLSEELL AFENQTECFS QIPFMEGTCD  240
SLTSLSSLFD GDNNINLWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2171127360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g035050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471263.10.0PREDICTED: ethylene-responsive transcription factor ERF073-like
SwissprotQ8H0T51e-101ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLR0I0A11e-144R0I0A1_9BRAS; Uncharacterized protein
STRINGXP_010471263.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.21e-113ERF family protein
Publications ? help Back to Top
  1. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]