PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g035420.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 300aa MW: 32915.5 Da PI: 9.4075

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g035420.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.6	2.2e-11	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+e l+ +++++G g Wk I r +R+ ++k++w+++ Csa16g035420.1 5 KLKWTGEEEEALLAGIAKHGAGKWKNILRDSEfsnqlINRSNIDLKDKWRNL 56 689*******************************999*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.395	1	62	IPR017930	Myb domain
SuperFamily	SSF46689	9.33E-15	3	60	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.2E-13	4	56	IPR009057	Homeodomain-like
SMART	SM00717	7.6E-8	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-8	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	8.62E-20	7	56	No hit	No description
SuperFamily	SSF46785	4.35E-13	127	215	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	3.5E-17	128	193	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	7.9E-10	129	208	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	22.996	130	204	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	4.1E-8	132	201	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MGNQKLKWTG EEEEALLAGI AKHGAGKWKN ILRDSEFSNQ LINRSNIDLK DKWRNLSIAP 60 GTQGSTNRAR PTKVKEEEGV TPPPVVTDEK TTPPPIVNPI IPPAPTLPRK KSIELITDQS 120 GSNSVVDTKN APRYDGMIFE ALSALADGNG SDVSSIFHFI EPRHEVPPNF RRVLSSRLRR 180 LASQSKLVKV STFKTLQNFY KIPDPSETRT TPAPKPKETH TKSRQSNNQA SAISLQMIEE 240 AAITAACKVV EAENKIDIAK AAGEEFEKMT KLAEGTEHLL VIANEIHEKC SRGEVVLLA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00231	DAP	Transfer from AT1G72740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g035420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY124849	4e-64	AY124849.1 Arabidopsis thaliana At1g72740/F28P22_7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010471305.1	0.0	PREDICTED: telomere repeat-binding factor 5
Swissprot	F4IEY4	1e-143	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	D7KR33	1e-154	D7KR33_ARALL; DNA-binding family protein
STRING	XP_010471305.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2321	28	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.1	1e-123	MYB_related family protein

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]