PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g035670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 216aa    MW: 24791.2 Da    PI: 7.692
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g035670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.2e-39131131101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++r+kC+k+C+lapyfp+++pk+f n+hklFG+sn++k++k ++e++r++am+ l+y+A+ara dP+ G ++v+ +l++++e+ +ael+
  Csa16g035670.1  13 ACAACKYQRKKCTKNCILAPYFPQDRPKQFLNAHKLFGVSNITKMIKGVEESQRDIAMQNLIYHANARALDPIGGLYRVMCDLKRKIECCQAELN 107
                     7********************************************************************************************** PP

          DUF260  96 llkeel 101
                      +++++
  Csa16g035670.1 108 FTHQQI 113
                     **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.3512113IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3613110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSFSAHSGGS TIACAACKYQ RKKCTKNCIL APYFPQDRPK QFLNAHKLFG VSNITKMIKG  60
VEESQRDIAM QNLIYHANAR ALDPIGGLYR VMCDLKRKIE CCQAELNFTH QQIAMCRSLA  120
HQQEQRQRQD LPFGCYSYGE LLQQEDEYVN VDGYGFQNVQ QHQEMQQQES PINYEMLLKM  180
PEQTSKVKLE ERTTISDQEQ NNLLRQILMS SSPIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2691137111LOB family transfactor Ramosa2.1
5ly0_B4e-2691137111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g035670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471345.11e-161PREDICTED: LOB domain-containing protein 7
SwissprotQ9SSM92e-97LBD7_ARATH; LOB domain-containing protein 7
TrEMBLA0A087HHY61e-100A0A087HHY6_ARAAL; Uncharacterized protein
STRINGXP_010471345.11e-160(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.13e-99LOB domain-containing protein 7