PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g036550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family EIL
Protein Properties Length: 584aa    MW: 65994.5 Da    PI: 5.0092
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g036550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN34363.6e-133374001351
                     XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
            EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 
                     e+l++rmwkd+++lkr+ker+k     + a   ++  +k+++qa+rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g+sd++raWW
  Csa16g036550.1  37 EDLERRMWKDRVRLKRIKERQKVGS--QGA-QTKEMPKKISDQAQRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSGSSDNIRAWW 128
                     89*****************999754..444.5567789********************************************************* PP

                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT- CS
            EIN3  96 kekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdq 190
                     kekv+fd+ngpaai+ky+ ++l++++++++    ++++  l++lqD+tlgSLLs+lmqhcdppqr+fplekg++pPWWPtG+e+ww +lgl+k+q
  Csa16g036550.1 129 KEKVKFDKNGPAAIAKYEEECLAFGKSDGN----RNSQFVLQDLQDATLGSLLSSLMQHCDPPQRKFPLEKGTPPPWWPTGDEEWWVKLGLPKSQ 219
                     ************************987777....77999******************************************************** PP

                     -.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX......XXXX....XXXX CS
            EIN3 191 gtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss......slrk....qspk 273
                     + ppy+kphdlkk+wkv+vLtavi+hmsp+i++i++++rqsk+lqdkm+akes+++l+vlnqee+++++ s++  +s         +    +++k
  Csa16g036550.1 220 S-PPYRKPHDLKKMWKVGVLTAVINHMSPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLIQQPSSDngNSnvtethR--RgnnaDRRK 311
                     *.9**********************************************************************66226887540..334447788 PP

                     XXXXXXXXXXXXXXXXXX.XXXXXXXXXX..................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXX CS
            EIN3 274 vtlsceqkedvegkkeskikhvqavktta..................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsis 350
                      ++++++++dv+g ++ + + ++++++++                  +++ +r+rk+++ +s +v       + q+++ ++ e+++i++d+n+++
  Csa16g036550.1 312 NVINSDSDYDVDGAEDASGSVSSKDSRRNliqkeqataishsirdqdKAEKHRRRKRPRIRSGTV-------NPQEEEQPEAEQRNILPDMNHVD 399
                     8999999*****88877778777777777888888888987665544444444444444444444.......45566667789999****99987 PP

                     X CS
            EIN3 351 q 351
                      
  Csa16g036550.1 400 A 400
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048732.7E-12637282No hitNo description
Gene3DG3DSA:1.10.3180.102.4E-71158290IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.57E-60163285IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MGDLAMTEAD RMENEPDDLV SDNVAEIDVS DEEIDAEDLE RRMWKDRVRL KRIKERQKVG  60
SQGAQTKEMP KKISDQAQRK KMSRAQDGIL KYMLKLMEVC KVRGFVYGII PEKGKPVSGS  120
SDNIRAWWKE KVKFDKNGPA AIAKYEEECL AFGKSDGNRN SQFVLQDLQD ATLGSLLSSL  180
MQHCDPPQRK FPLEKGTPPP WWPTGDEEWW VKLGLPKSQS PPYRKPHDLK KMWKVGVLTA  240
VINHMSPDIA KIKRHVRQSK CLQDKMTAKE SAIWLAVLNQ EESLIQQPSS DNGNSNVTET  300
HRRGNNADRR KNVINSDSDY DVDGAEDASG SVSSKDSRRN LIQKEQATAI SHSIRDQDKA  360
EKHRRRKRPR IRSGTVNPQE EEQPEAEQRN ILPDMNHVDA PLLEYNINGT HHEDSVVDPN  420
ITLGPEDNGL ELVLPEFNNS YTYLPPVSGQ AIMPVDERPM LYEPNPNQEL QFGSGYNFYN  480
PSAVFVNNHE DDILHTQIEM NTQAPTHTSG FETQGGLFQP HSLHGNEDGV SGSELPPQYQ  540
TDQDKLLDSS ILSPFNDLAF DSTTLYSGFD SYAFDDDFSW FGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A3e-851622939140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00649PBMTransfer from LOC_Os09g31400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g036550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0042150.0AF004215.1 Arabidopsis thaliana ethylene-insensitive3-like3 (EIL3) mRNA, complete cds.
GenBankAY0700440.0AY070044.1 Arabidopsis thaliana putative ethylene-insensitive protein EIL3 (At1g73730) mRNA, complete cds.
GenBankAY1338390.0AY133839.1 Arabidopsis thaliana clone U18784 putative ethylene-insensitive protein EIL3 (At1g73730) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471440.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLR0IA250.0R0IA25_9BRAS; Uncharacterized protein
STRINGXP_010471440.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.10.0ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]