PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g038730.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 258aa MW: 28309.5 Da PI: 7.5733

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g038730.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.8	5.9e-14	97	141	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+Wk I++ + k Rt q+ s+ qky Csa16g038730.1 97 PWTEEEHKLFLVGLQRVGKGDWKGISKNFVKSRTSTQVASHAQKY 141 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.8E-11	88	142	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.305	90	146	IPR017930	Myb domain
SuperFamily	SSF46689	2.84E-17	92	147	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.6E-17	93	144	IPR006447	Myb domain, plants
SMART	SM00717	2.1E-9	94	144	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-11	97	141	IPR001005	SANT/Myb domain
CDD	cd00167	1.01E-8	97	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MTDGSTTSSS ESTNVCGGVV RREIMLFGFR VVLDPMRKCV SLNNLSEYEQ TDESPKIDGE 60 DRDGQDKNKT PAGYASADEA VPMSSSNAKS ERKRGVPWTE EEHKLFLVGL QRVGKGDWKG 120 ISKNFVKSRT STQVASHAQK YFLRRSNINR RRRRSSLFDM TTDTVMPMED DQVVMQENTS 180 QSSSVIPEIN NFSIHPVMQV YPEINNISGG NASGNQPYGQ FGSSRPAPLS LNLSLASSNL 240 NEPSSSMHSA FNTIGVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g038730.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK318855	0.0	AK318855.1 Arabidopsis thaliana AT1G74840 mRNA, complete cds, clone: RAFL16-10-L11.
GenBank	AY070098	0.0	AY070098.1 Arabidopsis thaliana putative myb-related transcription activator protein (At1g74840) mRNA, complete cds.
GenBank	AY096393	0.0	AY096393.1 Arabidopsis thaliana putative myb-related transcription activator (At1g74840) mRNA, complete cds.
GenBank	AY519510	0.0	AY519510.1 Arabidopsis thaliana MYB transcription factor (At1g74840) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010471576.1	0.0	PREDICTED: transcription factor MYB1R1
Swissprot	Q2V9B0	9e-52	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	R0IBE6	1e-141	R0IBE6_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010471576.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	1e-112	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]