PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g039490.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

DBB

Protein Properties

Length: 478aa MW: 52631.7 Da PI: 5.8884

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g039490.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.3	1.4e-07	3	34	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 +C+ ++++e++ fC+ ++ lC C H+ Csa16g039490.1 3 IRCDVCDKEEASVFCTADEASLCGGCDHRVHH 34 58*************************99974 PP
2	zf-B_box	29.9	1.1e-09	57	94	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ +++k++ lfC++++ lC+dC +++H Ht Csa16g039490.1 57 SPLCDICQDKKALLFCQQDRAILCKDCDSSIHAAneHT 94 679*****************************556776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.523	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	3.58E-6	3	47	No hit	No description
Pfam	PF00643	1.5E-5	3	34	IPR000315	B-box-type zinc finger
SMART	SM00336	2.7E-6	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	6.4E-14	55	102	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.352	55	102	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.8E-8	57	95	IPR000315	B-box-type zinc finger
CDD	cd00021	2.11E-11	58	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MKIRCDVCDK EEASVFCTAD EASLCGGCDH RVHHANKLAS KHLRFSLLYP SSSNNTSPLC 60 DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF LLTGVKLSAT SSVYKPTSSE 120 SSTSSNSQDC SVPGSSISNP PPLKKPLSPP PQTNNNNNNS KIQPGDATIN QWGSTSTISE 180 YLIDTLPGWH VEDFLDSSLP PFGFSKSGDD DGVLPYVEAE DDSTKKNNNN TVSLPSKSLG 240 IWVPQIPQTL PSSYPNDHYF SQDNNNIQFG MYNKGTSPEV QSYAPIQNMK QQGQNNKRWY 300 DDGGFTVPQI TPTPTTTTTT FAHPXLPGWH VEDFLDSSLP PFGFSKSGDD DGVLPYVEAE 360 DDSTKKNNNN TVSLPSKSLG IWVPQIPQTL PSSYPNDHYF SQDNNNIQFG MYNKGTSPEV 420 QSYAPIQNMK QQGQNNKRWY DDGGFTVPQI TPTPTTTTTT FAHPSPLSSN KKSRSFW*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MKIRCDVCDK EEASVFCTAD EASLCGGCDH RVHHANKLAS KHLRFSLLYP SSSNNTSPLC  60
DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF LLTGVKLSAT SSVYKPTSSE  120
SSTSSNSQDC SVPGSSISNP PPLKKPLSPP PQTNNNNNNS KIQPGDATIN QWGSTSTISE  180
YLIDTLPGWH VEDFLDSSLP PFGFSKSGDD DGVLPYVEAE DDSTKKNNNN TVSLPSKSLG  240
IWVPQIPQTL PSSYPNDHYF SQDNNNIQFG MYNKGTSPEV QSYAPIQNMK QQGQNNKRWY  300
DDGGFTVPQI TPTPTTTTTT FAHPXLPGWH VEDFLDSSLP PFGFSKSGDD DGVLPYVEAE  360
DDSTKKNNNN TVSLPSKSLG IWVPQIPQTL PSSYPNDHYF SQDNNNIQFG MYNKGTSPEV  420
QSYAPIQNMK QQGQNNKRWY DDGGFTVPQI TPTPTTTTTT FAHPSPLSSN KKSRSFW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269\|PubMed:17965270, ECO:0000269\|PubMed:21070414}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g039490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493536	0.0	AB493536.1 Arabidopsis thaliana At1g75540 mRNA for hypothetical protein, partial cds, clone: RAAt1g75540.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010416445.1	0.0	PREDICTED: B-box zinc finger protein 21-like
Swissprot	Q9LQZ7	0.0	BBX21_ARATH; B-box zinc finger protein 21
TrEMBL	A0A178WQ55	0.0	A0A178WQ55_ARATH; STH2
STRING	XP_010416445.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5400	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	1e-169	salt tolerance homolog2

Publications ? help Back to Top
Xu D, et al. BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60 [PMID:27325768] Xu DB, et al. The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis. Mol Plant, 2017. 10(9): p. 1206-1223 [PMID:28827171] Xu D,Jiang Y,Li J,Holm M,Deng XW The B-Box Domain Protein BBX21 Promotes Photomorphogenesis. Plant Physiol., 2018. 176(3): p. 2365-2375 [PMID:29259103] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209] Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum. Plant Physiol., 2018. 177(1): p. 369-380 [PMID:29555784] Kang X, et al. HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture. Plant Cell Environ., 2018. 41(8): p. 1912-1925 [PMID:29748960]