PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g043020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 520aa    MW: 56252.3 Da    PI: 9.7492
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g043020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1331.3e-10369427563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     kr +r   NR++A rs +RK  +++eLe kv++L++e ++   +l +l+  +  l++++
  Csa16g043020.1 369 KRVKRILANRVSAARSKERKTRYMAELEHKVQTLQTEATTISAQLTHLQRDSMGLTNQN 427
                     899*******************************************9998887777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.3E-18365429IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.461367430IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.22E-11369425No hitNo description
Gene3DG3DSA:1.20.5.1705.6E-11369426No hitNo description
PfamPF001706.0E-9369426IPR004827Basic-leucine zipper domain
CDDcd147032.14E-19370419No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010628Biological Processpositive regulation of gene expression
GO:0010629Biological Processnegative regulation of gene expression
GO:0090567Biological Processreproductive shoot system development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MGDTDTNMMQ RVNSSSGTSS SSIPKQVKPN LLHLNPALLR SQHHQFRQPF SGPPPLPIPP  60
VSPYSQIPAT LQLKHSRSLS QPSSYFSFDS FSPFNPSPPP VSVSVEEKTG AGFTPSLPPS  120
PFTMCHSSSS RNAGDGENLP PRKSHRRSSS DVTFGFSSTV AQNQKSPPLA PSRSLERSIS  180
GGEVSDRSSL VKEEPREGFV KARKSEGEAA AAMDDVFTAY MNLDNIDVLN SFGGEDGKNG  240
NGNVEEMESS RGSGTKKTNG GSSSDSEGES SASGNVKAAA SSSSGVKRRA GGDIGHNRSV  300
SMDSSFMGKL SFGDEKLPPS SAKVSPTNSA EGNSSAYSVE FGNSEFTAAE MKKIAADEKL  360
AEIVMADPKR VKRILANRVS AARSKERKTR YMAELEHKVQ TLQTEATTIS AQLTHLQRDS  420
MGLTNQNSEL KFRLQAMEQQ AQLRDALSEK LTEEVQRLKR VIGELNRRQS GSSESNISKT  480
SLNPEMFQQL SISQLQHQQM HHHFNQNNST MKAKHTSNE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00037PBMTransfer from AT2G21230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g043020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472102.10.0PREDICTED: uncharacterized protein LOC104751777
TrEMBLR0HSG30.0R0HSG3_9BRAS; Uncharacterized protein
STRINGXP_010472102.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156251417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21230.10.0bZIP family protein