PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g043220.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SRS
Protein Properties Length: 212aa    MW: 24352.7 Da    PI: 9.0234
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g043220.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702193.66.7e-6061615154
          DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsst...klssaes 96 
                     + +C+dCGnqakk+C+++RCRtCCks++f+C+th+kstWvpa++r+++qq++++ + +    +++++ kr rel+    s+ ss+    +++  +
  Csa16g043220.1   6 GRRCEDCGNQAKKECVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSHHQQHQHQRQPQPLF-TTSSNIKRLRELQRLPDSSPSSSsacDIETFFP 99 
                     569*********************************************9999887666654.566666777776443333333330003333333 PP

          DUF702  97 kkeletss....lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                        +++++    lP+e++ +a frc++vss+ dg+e++aYqt+v+igGh+f+GiL+dqG+e+
  Csa16g043220.1 100 ILGVQIRTtpehLPAELNFPADFRCLKVSSIHDGKEQYAYQTTVNIGGHIFRGILHDQGPEK 161
                     333333334455************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-556160IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.5E-28950IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.9E-26111159IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MMMIMGRRCE DCGNQAKKEC VYMRCRTCCK SKAFHCQTHI KSTWVPAYRR SHHQQHQHQR  60
QPQPLFTTSS NIKRLRELQR LPDSSPSSSS ACDIETFFPI LGVQIRTTPE HLPAELNFPA  120
DFRCLKVSSI HDGKEQYAYQ TTVNIGGHIF RGILHDQGPE KVMVDHHNNR NCNNRQETLL  180
PPSTSSYPLM ITSHFTDFMS GSNQYSSVLR R*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g043220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472130.11e-119PREDICTED: protein SHI RELATED SEQUENCE 3-like
SwissprotQ9SJT82e-90SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBLA0A1P8AZ682e-94A0A1P8AZ68_ARATH; SHI-related sequence3
STRINGXP_010472130.11e-118(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91882638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.13e-88SHI-related sequence3