PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g043660.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 200aa    MW: 23021.3 Da    PI: 6.343
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g043660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY902e-28106164159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYG+K+++gs+fpr+Y++C+ ++C+vkk+ +r++++p++v +tYeg Hnh+
  Csa16g043660.1 106 LDDGYKWRKYGKKPIRGSPFPRHYHKCSNPDCNVKKRTDRDTNNPDYVLTTYEGIHNHP 164
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-2699166IPR003657WRKY domain
PROSITE profilePS5081127.519101166IPR003657WRKY domain
SuperFamilySSF1182902.09E-24102166IPR003657WRKY domain
SMARTSM007742.7E-28106165IPR003657WRKY domain
PfamPF031062.3E-20107164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MNYPSNPNPS STDFTEFFKF DDFEDSFHMI MEEIGREDHS SSPTLSWTSS EIFVAAEITS  60
PLQTSLATSP MSFEIGEKDE IKKRKRHKDD PIVHVFKTKS TENFALDDGY KWRKYGKKPI  120
RGSPFPRHYH KCSNPDCNVK KRTDRDTNNP DYVLTTYEGI HNHPSPSVVY CDSDDFDLTS  180
HNNWSFKTNT YSFSHSAPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-221061671778Probable WRKY transcription factor 4
2lex_A8e-221061671778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g043660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0252610.0BT025261.1 Arabidopsis thaliana At2g21900 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472190.11e-147PREDICTED: probable WRKY transcription factor 59
SwissprotQ9SJ091e-105WRK59_ARATH; Probable WRKY transcription factor 59
TrEMBLR0HGK71e-119R0HGK7_9BRAS; Uncharacterized protein
STRINGXP_010472190.11e-146(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138351726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21900.11e-104WRKY DNA-binding protein 59