PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g045060.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 310aa MW: 33580.9 Da PI: 10.2575

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g045060.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100	1.4e-31	233	290	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+a+d +++++tYeg+Hnh+ Csa16g045060.1 233 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAADDSSMLIVTYEGDHNHS 290 99**********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	4.4E-16	182	229	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.8E-33	220	290	IPR003657	WRKY domain
PROSITE profile	PS50811	30.607	226	292	IPR003657	WRKY domain
SuperFamily	SSF118290	8.37E-27	229	291	IPR003657	WRKY domain
SMART	SM00774	1.7E-37	231	291	IPR003657	WRKY domain
Pfam	PF03106	3.8E-27	233	289	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MAVELMTRNY ISGVGADSFA VQEAAASGLK SMENFIGLMS RESSLNSDQP SSSSAAADLE 60 SARNTTADAA VLKFKRVISL LDRTRTGHAR FRRAPVQVMN QEEPKTTTFH SPSLPPPPPP 120 PQQMMMRKGS ITSSIKTIDF SSLSSVTTES EHNHRPSETA PFRSQTQSLS TTVSSFSKPN 180 SKRKCNSENL FAGKCASASS SGRCHCSKKR KIKQRRVIRV PAISAKMSDV PPDDYSWRKY 240 GQKPIKGSPH PRGYYKCSSV RGCPARKHVE RAADDSSMLI VTYEGDHNHS LSAADLAGAA 300 VADLILESS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-22	219	291	2	73	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g045060.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF224704	1e-160	AF224704.1 Arabidopsis thaliana WRKY DNA-binding protein 15 (WRKY15) mRNA, complete cds.
GenBank	AF370194	1e-160	AF370194.1 Arabidopsis thaliana putative WRKY-type DNA-binding protein (At2g23320) mRNA, complete cds.
GenBank	AY062950	1e-160	AY062950.1 Arabidopsis thaliana putative WRKY-type DNA-binding protein (At2g23320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010472333.1	0.0	PREDICTED: probable WRKY transcription factor 15
Swissprot	O22176	1e-175	WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBL	R0HTZ8	1e-176	R0HTZ8_9BRAS; Uncharacterized protein
STRING	XP_010472333.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1715	28	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	1e-142	WRKY DNA-binding protein 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638]