PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g046540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 197aa    MW: 22099.5 Da    PI: 8.9284
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g046540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.65e-21443342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i+ +s rqvtfskRr+g++KKA+EL++LC+ae+ +i+fs 
  Csa16g046540.1  4 IKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSL 43
                    8999**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-21153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.381154IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-24274IPR002100Transcription factor, MADS-box
PfamPF003199.1E-24350IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-91631IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-93152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVKIKKESHR QVTFSKRRAG LFKKASELCT LCGAEIGIIV FSLAKKPFSF GHPSVESVLD  60
RYLSRNNISL AQTQQPQGNP AAGCELNIQL TQILSEVEDE KKKGQAMEEI RKASVRRSVI  120
NWWEKPVEEM NMFQLQEMKH ALEELRKTVV TNMASFSEVK EDVFGFLDNK VTAPPYMNMS  180
AGLSSIYNFA NGNGCF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g046540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065850.0AC006585.8 Arabidopsis thaliana chromosome 2 clone F27C12 map mi238, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ0565420.0DQ056542.1 Arabidopsis thaliana MADS-box family protein (At2g24840) mRNA, complete cds.
GenBankEU8366910.0EU836691.1 Arabidopsis thaliana MADS box protein AGL61 (AGL61) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019093742.11e-145PREDICTED: agamous-like MADS-box protein AGL61
SwissprotQ4PSU41e-128AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLD7LJG11e-128D7LJG1_ARALL; Predicted protein
STRINGXP_010429480.11e-143(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-130AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]