PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g047290.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GeBP

Protein Properties

Length: 299aa MW: 33701 Da PI: 7.0403

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g047290.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	111.1	7.5e-35	67	163	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 lf r+w+eeDe+++L+Gl+d++aktg +++ d+dafy+f+ +si k+sk+q++ Kir+LK++f + +k+++g +p+f++++d+++f++s++iW Csa16g047290.1 67 LFIRIWNEEDELAVLKGLVDYRAKTGFQSKIDWDAFYRFLGSSIAEKFSKEQVLGKIRKLKRRFLVHLEKINQGCDPKFTRSSDSEAFGFSMMIW 161 688******************************************************************************************** PP DUF573 97 gs 98 g+ Csa16g047290.1 162 GQ 163 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	7.7E-26	69	162	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MVSPKHLELY SSGGAADSDD TFSKQISPRN PSSKRAAASD AAEEEATKKK KKKKKKKKTT 60 TKLGSPLFIR IWNEEDELAV LKGLVDYRAK TGFQSKIDWD AFYRFLGSSI AEKFSKEQVL 120 GKIRKLKRRF LVHLEKINQG CDPKFTRSSD SEAFGFSMMI WGQNEVGHDD DDGMDKEMLK 180 DQEEPLNGEE MFKAHEDVAN TERLNENGAA KVTETAGKES HDDDDDELCA VRDAFETVMS 240 QGLSGYQKKL QLEKLMNIGN CKRRELSDEW KALCVEERKL NIKKLRFSAK LAEAANDG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	57	KKKKKKKKKK
2	49	57	KKKKKKKKK
3	51	57	KKKKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269\|PubMed:12535344, ECO:0000269\|PubMed:21875893, ECO:0000269\|PubMed:29192025, ECO:0000305\|PubMed:18162594}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00061	PBM	Transfer from AT4G00270	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g047290.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269\|PubMed:12535344}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY072164	9e-99	AY072164.1 Arabidopsis thaliana unknown protein (At2g25650) mRNA, complete cds.
GenBank	AY084223	9e-99	AY084223.1 Arabidopsis thaliana clone 100283 mRNA, complete sequence.
GenBank	AY096417	9e-99	AY096417.1 Arabidopsis thaliana unknown protein (At2g25650) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010472575.1	0.0	PREDICTED: GLABROUS1 enhancer-binding protein-like
Swissprot	Q9ASZ1	1e-124	STKLO_ARATH; GLABROUS1 enhancer-binding protein
TrEMBL	R0G0S3	1e-146	R0G0S3_9BRAS; Uncharacterized protein
STRING	XP_010472575.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00270.1	1e-121	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Nietzsche M,Schießl I,Börnke F The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants. Front Plant Sci, 2014. 5: p. 54 [PMID:24600465] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]