PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g051100.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 374aa    MW: 41379.6 Da    PI: 4.9141
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g051100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.4e-182269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed ll+ +v ++G g+W+++ ++ g+ R++k+c++rw ++l
   Csa16g051100.1 22 KGPWTQAEDNLLIAYVDKHGDGNWNAVQKHSGLSRCGKSCRLRWVNHL 69
                     79*******************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.8981773IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-231872IPR009057Homeodomain-like
SMARTSM007173.3E-152171IPR001005SANT/Myb domain
PfamPF002492.3E-162269IPR001005SANT/Myb domain
SuperFamilySSF466892.23E-232399IPR009057Homeodomain-like
CDDcd001672.39E-122469No hitNo description
PROSITE profilePS500905.78470101IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-1173103IPR009057Homeodomain-like
SMARTSM007170.1674159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGKVRNDSGS DDDTATEKTF TKGPWTQAED NLLIAYVDKH GDGNWNAVQK HSGLSRCGKS  60
CRLRWVNHLR PDLKKGAFTE KEEQRVIELH ALLGNKWARM AGEQAMNAAT QSGLNNGHSL  120
DGHHSQDSLE SDSVEIPELD FQHLPLNQCS SYYKSMLRSV PTSGVFVRQN PCFFQPNVYH  180
LMSSSPSYMS TGKRSREPET AFPCTGGSYA MNEQSPPLWN YPFVDNISEQ LPDSHLLDDN  240
ATYYSPPEPL IHELPSFQYF NPHEEPGGAQ QSNSMQVHES DNTLVQSPLS PSSLYDGLLE  300
SIVYGSASKK QVTGTDLEST LLLQSSSLLG HTDEPTTTDN LGCFGSTSSN ERRISFDGDW  360
IRLLLGEDTC PPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2020101585B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g051100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473083.10.0PREDICTED: transcription factor MYB104-like
SwissprotQ9SM274e-83MY104_ARATH; Transcription factor MYB104
TrEMBLD7LFF11e-175D7LFF1_ARALL; Predicted protein
STRINGXP_010473083.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.11e-164myb domain protein 81
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]