PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g051550.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NF-YB

Protein Properties

Length: 255aa MW: 28167.5 Da PI: 3.9408

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g051550.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	37.9	4.3e-12	10	101	7	93
NF-YB 7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 +lP+a v r++k+ l + + i k+a e + fi +++s a+d c+ +r+t+++d ++ al ++ f +++eplk+ l+ +++ Csa16g051550.1 10 ELPLAIVRRVVKEKLSEcspdyDVSIHKEALLAFSESARIFIHYLSSTANDFCKDARRQTMKADYVFKALDEMDFSEFLEPLKASLEDFKKK 101 69********999752222356899*********************************************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	2.2E-6	10	78	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	8.1E-23	10	99	IPR009072	Histone-fold
SuperFamily	SSF47113	1.68E-17	12	101	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MESEKVVVDE LPLAIVRRVV KEKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSSTAND 60 FCKDARRQTM KADYVFKALD EMDFSEFLEP LKASLEDFKK KNAGKRAGGG PAASKPAGGA 120 ATKPTETKKR KQEGPSAQKN ARKCKRDDGG NKNDEENEND NTEEENGNDE ENENDDENTE 180 ENGNGEESEK EDEDEENEKE DEGNSLEDNG NENDESGDED NSMEEIGSEN GEDNDNNNSS 240 NSSGEEVEGD EEDD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g051550.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT004083	1e-139	BT004083.1 Arabidopsis thaliana clone RAFL15-10-G12 (R20802) putative CCAAT-binding transcription factor subunit (At2g27470) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010473125.1	1e-179	PREDICTED: uncharacterized protein DDB_G0290685 isoform X1
TrEMBL	A0A1J3IA23	3e-83	A0A1J3IA23_NOCCA; DNA polymerase epsilon subunit 3 (Fragment)
STRING	XP_010473125.1	1e-178	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12007	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	5e-67	nuclear factor Y, subunit B11