PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g052230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 181aa    MW: 21859.5 Da    PI: 10.013
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g052230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.43.2e-111214611128
             NAM  11 deelvveyLkkkvegkk.....leleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                     ++e+v+ yLk  +   +      +  +++++ d+y  +P++L   +++     +  yfF++r+ ++    ++    +sg W+  g+dk ++s+ +
  Csa16g052230.1  12 EDEIVTTYLKMMMMIIDnngnvWP-RHFLRSQDVYCKNPSTLF-DTQNpwiLYDGRYFFVNRSVNS---GKTDGCDESGCWRVMGRDKLIKSEkT 101
                     689******998765553343222.3469999**********5.2222122334679***998754...467777899*************9866 PP

             NAM  97 gelvglkktLvfy.............kgrapkgektdWvmheyrl 128
                     g+  g kk+  f              k++++   k  Wvm+eyrl
  Csa16g052230.1 102 GKILGFKKVYKFCekekpksmfkfweKEKRRVRDKRIWVMEEYRL 146
                     6677888888888544444444444323444445999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.2452162IPR003441NAC domain
SuperFamilySSF1019412.09E-2312160IPR003441NAC domain
PfamPF023657.8E-1012146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MMKSSRHHQS IEDEIVTTYL KMMMMIIDNN GNVWPRHFLR SQDVYCKNPS TLFDTQNPWI  60
LYDGRYFFVN RSVNSGKTDG CDESGCWRVM GRDKLIKSEK TGKILGFKKV YKFCEKEKPK  120
SMFKFWEKEK RRVRDKRIWV MEEYRLASQW KQGYVICRIR LLYPNTLEFM LCNHIRGYYI  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g052230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473211.11e-134PREDICTED: uncharacterized protein LOC104752708
TrEMBLR0I8R21e-95R0I8R2_9BRAS; Uncharacterized protein
STRINGXP_010473211.11e-133(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161941114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60240.15e-89NAC family protein