PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g052720.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 195aa MW: 21805.2 Da PI: 4.9192

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g052720.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.7	1.3e-12	13	49	3	38
--SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLC.daevavi 38 i+nks ++v f+kRrng++ KA+EL+ L d ++a++ Csa16g052720.1 13 IQNKSAKTVAFTKRRNGLFRKASELCLLSpDSQIAIL 49 99**************************757777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00266	3.84E-16	3	63	No hit	No description
PROSITE profile	PS50066	13.316	3	40	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.5E-8	3	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-8	5	25	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.01E-13	5	79	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.8E-12	13	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-8	25	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MGGKKHKIDI VEIQNKSAKT VAFTKRRNGL FRKASELCLL SPDSQIAILA TPLSSNSHAS 60 FYSFGHSSVD QVVSSVLQDQ HPLSANQLEN RSGLRFNWWE DQGFDMSENV DELREAVDAV 120 SRMLNNARVR LDDAVKSNQR DGRLMICNEE TKTTNQNHIL EGESSGSAST LLVNEEDNLH 180 FDDFFTDFNI DPLM*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g052720.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010474561.1	1e-143	PREDICTED: agamous-like MADS-box protein AGL97
Swissprot	Q9C633	2e-40	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	R0GEX7	3e-90	R0GEX7_9BRAS; Uncharacterized protein
STRING	XP_010474561.1	1e-142	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60920.1	6e-75	AGAMOUS-like 55

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]