PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g055750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 183aa    MW: 20789.7 Da    PI: 5.8942
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g055750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.3e-152978255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr++    +Wv+e+r+p    ++ +r++lg++  ae+Aa+a++ a ++l+g
  Csa16g055750.1 29 IYRGVRRRN-GDKWVCEVREP----INqRRVWLGTYPVAEMAARAHDVAVLALRG 78
                    69****877.9******9997....245*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-252888No hitNo description
PfamPF008475.3E-112878IPR001471AP2/ERF domain
SMARTSM003801.2E-232992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-282988IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-192988IPR016177DNA-binding domain
PROSITE profilePS5103221.5492986IPR001471AP2/ERF domain
PRINTSPR003674.5E-73041IPR001471AP2/ERF domain
PRINTSPR003674.5E-75268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MERDGINVAE MKPKKRAGRR IFKETRHPIY RGVRRRNGDK WVCEVREPIN QRRVWLGTYP  60
VAEMAARAHD VAVLALRGRS ACLNFSDSAW RLPVPESTDP DTIRRTAAEA AEMFRPPEFS  120
TGITVLPLSG EFETSEGEGV AGMMMRLAEE PLMSPPRSYI DMNTSVYAEE EMCYEELSLW  180
SY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00104PBMTransfer from AT1G63030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g055750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107951e-173AC010795.5 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete sequence.
GenBankAK1759511e-173AK175951.1 Arabidopsis thaliana mRNA for putative transcription factor DREB1A, complete cds, clone: RAFL22-63-L19.
GenBankAY5608411e-173AY560841.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g63030) mRNA, complete cds.
GenBankBT0219171e-173BT021917.1 Arabidopsis thaliana At1g63030 mRNA, complete cds.
GenBankBT0257421e-173BT025742.1 Arabidopsis thaliana At1g63030 mRNA, complete cds.
GenBankCP0026841e-173CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16P171e-173AC011000.3 Sequence of BAC F16P17 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473531.11e-132PREDICTED: dehydration-responsive element-binding protein 1E
SwissprotQ9SGJ61e-120DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLD7KU341e-116D7KU34_ARALL; Uncharacterized protein
STRINGXP_010473531.11e-132(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.21e-123ERF family protein