PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g055760.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 487aa    MW: 50743.9 Da    PI: 5.3242
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g055760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.7e-1692140255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Csa16g055760.1  92 LYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYPTPEMAAAAYDVAALALKG 140
                     69***9.55.6*********854...5************************998 PP
2AP2513.7e-16323371255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Csa16g055760.1 323 LYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYPTPEMAAAAYDVAALALKG 371
                     69***9.55.6*********854...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-991140IPR001471AP2/ERF domain
CDDcd000181.42E-1691150No hitNo description
SMARTSM003809.0E-2992154IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1792150IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-2692150IPR001471AP2/ERF domain
PROSITE profilePS5103220.3192148IPR001471AP2/ERF domain
CDDcd000181.42E-16322381No hitNo description
PfamPF008471.8E-9322371IPR001471AP2/ERF domain
PROSITE profilePS5103220.31323379IPR001471AP2/ERF domain
SMARTSM003809.0E-29323385IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-26323381IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17323381IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MADPKNQITE PKAICQASSS SSVTVLPVRT CGDSVPDCAT CENPCPLDSI TSAATSTTTV  60
SFAAPSSTTS GHGINTLMST DADISRRKKH PLYRGIRCRS GKWVSEIREP KKTTRVWLGT  120
YPTPEMAAAA YDVAALALKG RDTVLNFPDS VGSYPIPLSS SAAHIRCAAA AAAAARGAGT  180
GATAVKGGEE KEEEACDGAG SSNTQHFVDE EELLNMPGLL ADMAKGMMHI YMADPKNQIT  240
EPKAICQASS SSSVTVLPVR TCGDSVPDCA TCENPCPLDS ITSAATSTTT VSFAAPSSTT  300
SGHGINTLMS TDADISRRKK HPLYRGIRCR SGKWVSEIRE PKKTTRVWLG TYPTPEMAAA  360
AYDVAALALK GRDTVLNFPD SVGSYPIPLS SSAAHIRCAA AAAAAARGAG TGATAVKGGE  420
EKEEEACDGA GSSNTQHFVD EEELLNMPGL LADMAKGMMV APPWMGSPPS DDSPENSDGE  480
SLWSYY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g055760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473532.11e-148PREDICTED: ethylene-responsive transcription factor ERF026-like
RefseqXP_010473533.11e-148PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9CAN91e-107ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A087HEJ51e-134A0A087HEJ5_ARAAL; Uncharacterized protein
STRINGXP_010473532.11e-148(Camelina sativa)
STRINGXP_010473533.11e-148(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.13e-39ERF family protein