PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17995s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 97aa    MW: 10979.4 Da    PI: 10.8232
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17995s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.53.2e-221196182
        trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82
                    +Wt++e+ aL++a+++++ +lrrg+l++++W++v++++      +g  +s++qC++k+e+l+kry+ +k+++ +r  + ss++ +f
  Csa17995s010.1 11 CWTDEETAALVNAYKDKWFALRRGNLRAADWDDVAAAVssssTVGGTPKSAIQCRHKIEKLRKRYRGEKQRALNRPGKFSSSWDLF 96
                    8*************************************9998899*****************************999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-221096No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
TTTTRRVPPP CWTDEETAAL VNAYKDKWFA LRRGNLRAAD WDDVAAAVSS SSTVGGTPKS  60
AIQCRHKIEK LRKRYRGEKQ RALNRPGKFS SSWDLFP
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17995s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1182451e-130AK118245.1 Arabidopsis thaliana At4g17060 mRNA for unknown protein, complete cds, clone: RAFL19-55-A07.
GenBankCP0026871e-130CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010440063.13e-65PREDICTED: uncharacterized protein LOC104723393
RefseqXP_010449671.13e-65PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A178UUN71e-62A0A178UUN7_ARATH; FIP2
STRINGXP_010440063.11e-64(Camelina sativa)
STRINGXP_010449672.11e-64(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104831828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.16e-26Trihelix family protein