PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g002520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 268aa    MW: 29939.7 Da    PI: 6.5728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g002520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.0008691113123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k+F+++  L  H  +H
  Csa17g002520.1  91 FQCKACKKVFTSHQALGGHRASH 113
                     89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.4E-990115IPR007087Zinc finger, C2H2
SuperFamilySSF576679.01E-690113No hitNo description
PROSITE profilePS5015710.15991118IPR007087Zinc finger, C2H2
SMARTSM003550.07291113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SuperFamilySSF576679.01E-6161188No hitNo description
PROSITE profilePS501579.307166188IPR007087Zinc finger, C2H2
PfamPF139122.7E-12166189IPR007087Zinc finger, C2H2
SMARTSM003550.51166188IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MNSSCIDFVM FSRGQHDEDN MSTRRPWKRP DSHQHHKHLN LSPNEDEELA NCLVLLSNSG  60
EAHGGDHHHH HHKHGHGKGK TVKKQKTAQV FQCKACKKVF TSHQALGGHR ASHKKVKGCF  120
ASQDKEEEEE EEYKEDDDEE EEEEDEMEDE DKSTAHIPRK RSSNSHECTI CHRVFSSGQA  180
LGGHKRCHWL TPSNYLRMTT SSLHDSVGRT QALDQPSLDL NLACQEYSVD PTAMSVGMIQ  240
RDGGGGGGNN HNATSSSWLK LASGDWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g002520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0300400.0BT030040.1 Arabidopsis thaliana At1g02040 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU899590.0U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171706.11e-139C2H2-type zinc finger family protein
TrEMBLQ3EDL31e-137Q3EDL3_ARATH; At1g02040
STRINGAT1G02040.11e-138(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138951318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.15e-24C2H2-like zinc finger protein