PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g005560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 243aa    MW: 28026.8 Da    PI: 9.701
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g005560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.93.4e-2291333127
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyat.gkrknr.atksgyWkatgkdkev 92 
                     +G rF P+d  lv + L++ ve+k+ ++   i+++d+y++ePw Lp+ v++   ++kewy+F+++ + +++  + + r   k+g+W++  ++ e+
  Csa17g005560.1   9 VGSRFVPNDLVLV-RQLRNMVERKQSSV--GITTMDVYQAEPWLLPH-VSNplfKKKEWYYFVPKFRDKRSsRSVPGRgGSKAGFWRSGVTKIEI 99 
                     79***********.66********9777..6***************4.233355889******9988765425567777799*********9*** PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127
                     ++ +++ +g kk L++++  + k++ tdW m ey 
  Csa17g005560.1 100 KD-GNKIIGYKKPLTYHTLVHGKAKPTDWRMTEYY 133
                     99.999***********999999999*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.157150IPR003441NAC domain
SuperFamilySSF1019417.59E-257148IPR003441NAC domain
PfamPF023652.5E-119132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGKPYHHLVG SRFVPNDLVL VRQLRNMVER KQSSVGITTM DVYQAEPWLL PHVSNPLFKK  60
KEWYYFVPKF RDKRSSRSVP GRGGSKAGFW RSGVTKIEIK DGNKIIGYKK PLTYHTLVHG  120
KAKPTDWRMT EYYRVDEGFQ NLVLCLIRDK TKTKVDKRIN HVPQTQTQPG PHSQYQLQPQ  180
PQVAAENTNN ILPNQLVHKE ADFTGFAEEL ETIMLEGQEE RDATEQQQEE EIPQIHDKTT  240
TS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g005560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480332.21e-168PREDICTED: uncharacterized protein LOC104759060
TrEMBLR0I9X61e-87R0I9X6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010480332.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145441119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.12e-33NAC domain containing protein 6