PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g007050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 289aa    MW: 32401.2 Da    PI: 5.9527
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g007050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_158.11.9e-18204265263
                     XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     ++ +r++r++kNRe+A rsR+RK+a++ eLe+ +++Le+eN++L ke+ee +ke +k  +ev
  Csa17g007050.1 204 AAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEENEQLLKEIEESTKERYKKLMEV 265
                     5789***************************************************9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.7E-14202258No hitNo description
SMARTSM003381.3E-14203267IPR004827Basic-leucine zipper domain
PfamPF001701.2E-17204265IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.277205257IPR004827Basic-leucine zipper domain
CDDcd147074.42E-18207253No hitNo description
SuperFamilySSF579591.56E-10207259No hitNo description
PROSITE patternPS000360210225IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MASFKMMSSS NSDLSRRNSS SASSSPSIRS SSHHLRPNLH TDHSRISFAY GGGNDYTFAS  60
DSKPLDMAVD TAERSIGDRN SVNNGKSVDD VWKEIVSGEQ KRIMMKEEAH DDVIMTLEDF  120
LAKAAMDDVD GDAANMDSDE IDVKIPPERL NNDGSYTFDF PMMPQTQPQP QRHSSFQMIE  180
GSMGGGGGVR GKRGRVMMEA MDKAAAQRQK RMIKNRESAA RSRERKQAYQ VELETLAAKL  240
EEENEQLLKE IEESTKERYK KLMEVLIPVD EKPRPSSRSL CRSHSLEW*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g007050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0030271e-124AC003027.1 Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete sequence.
GenBankAY0876031e-124AY087603.1 Arabidopsis thaliana clone 36980 mRNA, complete sequence.
GenBankBT0244951e-124BT024495.1 Arabidopsis thaliana At1g03970 mRNA, complete cds.
GenBankCP0026841e-124CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU018231e-124U01823.1 Arabidopsis thaliana Columbia bZIP protein GBF4 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475032.10.0PREDICTED: G-box-binding factor 4-like
SwissprotP427771e-152GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A384LG291e-150A0A384LG29_ARATH; GBF4
TrEMBLQ2HIT61e-150Q2HIT6_ARATH; At1g03970
STRINGXP_010475032.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.11e-111G-box binding factor 4