PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g007520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 134aa    MW: 14695 Da    PI: 7.7552
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g007520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.4e-201969255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++GVr+++ +g+++AeIrd ++ g   r++lg+f+tae+Aa+a+++a+ +++g
  Csa17g007520.1 19 KFRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEDAARAYDRAAYSMRG 69
                    79*******.**********65443..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.3E-351983IPR001471AP2/ERF domain
CDDcd000182.32E-171978No hitNo description
PfamPF008473.3E-141969IPR001471AP2/ERF domain
PROSITE profilePS5103223.4591977IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-231979IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.8E-321979IPR001471AP2/ERF domain
PRINTSPR003672.8E-112031IPR001471AP2/ERF domain
PRINTSPR003672.8E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MDQGGRTGGG GGGGAEQGKF RGVRRRPWGK YAAEIRDSRK HGERVWLGTF DTAEDAARAY  60
DRAAYSMRGQ AAILNFPHEY NMGTGSSSTA ANSSSSSRQV FEFEYLDDSV LDELLEYGEN  120
YNKTHNVNMG KRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-5411101114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311GGRTGGGGG
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g007520.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains). Not affected by methyl jasmonate (MeJA), ethylene or salicylic acid (SA). {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0264211e-156BT026421.1 Arabidopsis thaliana At1g04370 mRNA, complete cds.
GenBankCP0026841e-156CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF19P191e-156AC000104.1 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475087.12e-94PREDICTED: ethylene-responsive transcription factor 14
RefseqXP_010475088.12e-94PREDICTED: ethylene-responsive transcription factor 14
SwissprotP938228e-65ERF97_ARATH; Ethylene-responsive transcription factor 14
TrEMBLR0GSM33e-64R0GSM3_9BRAS; Uncharacterized protein
STRINGXP_010475087.18e-94(Camelina sativa)
STRINGXP_010475088.18e-94(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.17e-62Ethylene-responsive element binding factor 14