PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g008250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 410aa    MW: 45262.9 Da    PI: 8.3183
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g008250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.6e-114571127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+f++rtG C yG++C+++H+p
  Csa17g008250.1 45 PGERDCQFYLRTGLCGYGSSCRYNHPP 71
                    5789*********************97 PP
2zf-CCCH36.58e-1291115327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tG CkyG++Ck++H++
  Csa17g008250.1  91 QPDCEYFLKTGACKYGSTCKYHHPK 115
                     789********************96 PP
3zf-CCCH37.73.4e-12135160227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C++++rtGtC++G  C+F+H++
  Csa17g008250.1 135 GEKPCPYYLRTGTCRFGVACRFHHPQ 160
                     689*********************97 PP
4zf-CCCH40.25.6e-13261285226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++Crff+ tGtCkyGd Ck++H+
  Csa17g008250.1 261 DRPECRFFMNTGTCKYGDDCKYNHP 285
                     689*********************8 PP
5zf-CCCH29.21.6e-09306331126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C +f+ +G+Ck+G++CkF H+
  Csa17g008250.1 306 PGQPACGNFRSYGFCKFGPNCKFDHP 331
                     57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.684472IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-64471IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-84671IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-54871IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-45069IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-688115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.89688116IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-991115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-693116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-494114IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-6133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.032133161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-6133162IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10135160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5137160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591259287IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7260286IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10261285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6263285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5265284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5301331IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5305332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845305333IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-8307331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MRPMSDTQLV QSSLVSIRSS DFNIQDAFSK MKVNDDESNP YPDRPGERDC QFYLRTGLCG  60
YGSSCRYNHP PNLPQGNNAY YKEELPERIG QPDCEYFLKT GACKYGSTCK YHHPKDRNGA  120
EPVLFNVIGL PMRQGEKPCP YYLRTGTCRF GVACRFHHPQ PDNGHSTAYG MPSFPSTGLQ  180
YASGLTMMST YGTLPRPQVP QSYVPIMVSP SQGLFPPQGW GTYMAAPNPM YDVKNQPYYS  240
GSSASVPVAM TLNRGLPESS DRPECRFFMN TGTCKYGDDC KYNHPGVRIS PPPPSLINPF  300
VLPARPGQPA CGNFRSYGFC KFGPNCKFDH PVLPYPGLTM SASLPTPYAS PVLTHQRISP  360
SPSRSDSKSL SNGKPDVKKQ SSETEKPECD SEQLNNSKVH DLSEKSSST*
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g008250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934340.0AB493434.1 Arabidopsis thaliana At1g04990 mRNA for hypothetical protein, partial cds, clone: RAAt1g04990.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475174.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
SwissprotQ94AD90.0C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLD7KEA00.0D7KEA0_ARALL; Predicted protein
STRINGXP_010475174.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.20.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]