PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g009600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 249aa    MW: 27969.6 Da    PI: 5.5354
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g009600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-14143648
                     HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +eEd+ll+++++++G ++W++ ++  g+ R++k+c++rw +yl
   Csa17g009600.1  1 AEEDQLLINYITLHGHPNWRSLPQSAGLLRCGKSCRLRWINYL 43
                     59*************************99************97 PP
2Myb_DNA-binding46.87e-154994148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T  E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
   Csa17g009600.1 49 RGNFTSLEEDTIINLHQILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 94
                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-18150IPR009057Homeodomain-like
CDDcd001671.09E-7143No hitNo description
SMARTSM007173.8E-4145IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-24190IPR009057Homeodomain-like
PfamPF002492.6E-11143IPR001005SANT/Myb domain
PROSITE profilePS5129413.461143IPR017930Myb domain
PROSITE profilePS5129422.0084498IPR017930Myb domain
SMARTSM007171.7E-124896IPR001005SANT/Myb domain
PfamPF002493.3E-134994IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-255198IPR009057Homeodomain-like
CDDcd001671.44E-85194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
AEEDQLLINY ITLHGHPNWR SLPQSAGLLR CGKSCRLRWI NYLRPDIKRG NFTSLEEDTI  60
INLHQILGNR WSAIAAKLPG RTDNEIKNVW HTHLKKRLHQ NQDGDTKETV VTATSTTTTT  120
DAKRPTSPEQ QQQQSSSSGD VSAVTTSGNN NDHISNGNSK DSATSSKDVP PALIDESFWS  180
EVVSMDYNIS GDDHVKNEIK IENWEGSLDR NDNKGYNFSK LYNHDMEFWF DHLTTSPVVG  240
EISDISDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2029813108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g009600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934371e-124AB493437.1 Arabidopsis thaliana At1g06180 mRNA for hypothetical protein, partial cds, clone: RAAt1g06180.
GenBankAY5195501e-124AY519550.1 Arabidopsis thaliana MYB transcription factor (At1g06180) mRNA, complete cds.
GenBankBT0251731e-124BT025173.1 Arabidopsis thaliana At1g06180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475346.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9LNC91e-114MYB13_ARATH; Transcription factor MYB13
TrEMBLV4L2001e-117V4L200_EUTSA; Uncharacterized protein
STRINGXP_010475346.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.11e-108myb domain protein 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]