PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g010890.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 708aa MW: 80956.8 Da PI: 5.6677

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g010890.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	344.5	1.8e-105	328	704	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 ++lL+ cA+ vs+gd+ a+ lL ++++++sp gd+ qRla++f++AL+arl++ s++++ + + +++++ ++ l+++++f +sP++++ + Csa17g010890.1 328 RTLLTLCAQSVSAGDKITADDLLRQIRKQSSPLGDASQRLAHFFANALEARLQGsSGNTIQSYYDSIISKKRTAAQILKFYHVFLSASPFMTLIY 422 6799************************************************6666666666888888888****************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + N++Il+a++ ++ +HiiDf+i +G+QWp ++q L++ + g +lRiTg++ p++g +e+++ tg+rL+++++++g+pfe+n++++k++e+ Csa17g010890.1 423 FYSNKMILDAAKDASVLHIIDFGILYGFQWPMFIQHLSKNKTGLRKLRITGIELPQHGfrPTERIQDTGRRLTEYCKRFGIPFEYNAIASKNWET 517 *****************************************************9**************************99* PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +++ee++++p+E+laVn vl+ ++l d + e+ +rd +Lkl+++++P+v+ + + + n++ F +rf eal +ysalfd + a+l+re+ er Csa17g010890.1 518 IRIEEFKIRPNEVLAVNTVLRFKNLRDATPGEEDcPRDGFLKLIRDMNPNVFLSSTINGSFNAPFFTTRFKEALFHYSALFDLFGATLSRENPER 612 **********************9999888889******************************************************* PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 i E e+ gre++nv+aceg +r+er et+++W+ r+ +aGFk+ p++ + +++ + ++k + + + ++e+s+++++gWk+r L+s S+W Csa17g010890.1 613 IHFEGEFYGREVMNVIACEGVDRVERPETYKQWQVRMIRAGFKQKPVKAELVESFRVKMKKWGyHKDFVLDEDSNWFLQGWKGRILFSSSCW 704 ********************************************************9999999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.363	301	684	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.1E-103	328	704	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence Send to blast
MESKNYSRVV NGYECYDVSF LPNQIPDLGF GVPSSTDFDL RIDQYHHHHQ PSSIWVPPPS 60 QDDQYSPPAD EIDSENTLLK YVNQLLMEES IAENQSMFYD SLALRQTEEM LQQVINDSQT 120 QSHLPNSVTT SSSSNSSGDY WSSSNSTETA ANSTTETEVL YDNHLVDSGV VSDPRSNMLQ 180 FGQPDNEVLV RSMFSDADSV MQFKRGLEEA SKFLPNTDQW IFNLDPEKER VVPVKEEKDW 240 SGISRARKSH HAREEEEDDL EETRSSKQYA VNVEDGKLTE MFDKVLLLDG ECDPQIQEDG 300 ENGSNKVLHQ AKKGTGRGKK KSQAVDFRTL LTLCAQSVSA GDKITADDLL RQIRKQSSPL 360 GDASQRLAHF FANALEARLQ GSSGNTIQSY YDSIISKKRT AAQILKFYHV FLSASPFMTL 420 IYFYSNKMIL DAAKDASVLH IIDFGILYGF QWPMFIQHLS KNKTGLRKLR ITGIELPQHG 480 FRPTERIQDT GRRLTEYCKR FGIPFEYNAI ASKNWETIRI EEFKIRPNEV LAVNTVLRFK 540 NLRDATPGEE DCPRDGFLKL IRDMNPNVFL SSTINGSFNA PFFTTRFKEA LFHYSALFDL 600 FGATLSRENP ERIHFEGEFY GREVMNVIAC EGVDRVERPE TYKQWQVRMI RAGFKQKPVK 660 AELVESFRVK MKKWGYHKDF VLDEDSNWFL QGWKGRILFS SSCWVPS*

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence Send to blast

MESKNYSRVV NGYECYDVSF LPNQIPDLGF GVPSSTDFDL RIDQYHHHHQ PSSIWVPPPS  60
QDDQYSPPAD EIDSENTLLK YVNQLLMEES IAENQSMFYD SLALRQTEEM LQQVINDSQT  120
QSHLPNSVTT SSSSNSSGDY WSSSNSTETA ANSTTETEVL YDNHLVDSGV VSDPRSNMLQ  180
FGQPDNEVLV RSMFSDADSV MQFKRGLEEA SKFLPNTDQW IFNLDPEKER VVPVKEEKDW  240
SGISRARKSH HAREEEEDDL EETRSSKQYA VNVEDGKLTE MFDKVLLLDG ECDPQIQEDG  300
ENGSNKVLHQ AKKGTGRGKK KSQAVDFRTL LTLCAQSVSA GDKITADDLL RQIRKQSSPL  360
GDASQRLAHF FANALEARLQ GSSGNTIQSY YDSIISKKRT AAQILKFYHV FLSASPFMTL  420
IYFYSNKMIL DAAKDASVLH IIDFGILYGF QWPMFIQHLS KNKTGLRKLR ITGIELPQHG  480
FRPTERIQDT GRRLTEYCKR FGIPFEYNAI ASKNWETIRI EEFKIRPNEV LAVNTVLRFK  540
NLRDATPGEE DCPRDGFLKL IRDMNPNVFL SSTINGSFNA PFFTTRFKEA LFHYSALFDL  600
FGATLSRENP ERIHFEGEFY GREVMNVIAC EGVDRVERPE TYKQWQVRMI RAGFKQKPVK  660
AELVESFRVK MKKWGYHKDF VLDEDSNWFL QGWKGRILFS SSCWVPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-42	327	704	5	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g010890.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010475510.1	0.0	PREDICTED: scarecrow-like protein 31
Swissprot	Q3EDH0	0.0	SCL31_ARATH; Scarecrow-like protein 31
TrEMBL	R0INN7	0.0	R0INN7_9BRAS; Uncharacterized protein
STRING	XP_010475510.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13511	17	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	0.0	GRAS family protein