PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g011410.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NF-YC

Protein Properties

Length: 211aa MW: 23373.1 Da PI: 10.0381

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g011410.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	48.1	2.6e-15	105	192	12	99
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++d k ++P+ ri++i+++d+ +i +a l+ ka e+fi ++ ++ + + k++ ++ ++++v++ + ++fl d vp++ Csa17g011410.1 105 GVEDAKMFRFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYESSVQDKKKFIHYKHLSSVVSNDERYEFLADYVPEK 192 57899999*****************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.12E-19	112	191	IPR009072	Histone-fold
Pfam	PF00808	9.3E-22	113	176	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.1E-24	114	191	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MVSSKKPKEK KAKSDAVNKT GGGRSKRSSG SRTKKASNKV NIVKKEAEIH EISDSSSSDS 60 VEEEAIRSDA PKKSNGAVSK GRNGKRGGGG NPTKTSKNRE EDDGGVEDAK MFRFPMNRIR 120 RIMRSDNSAP QIMQDAVFLV NKATEMFIER FSEEAYESSV QDKKKFIHYK HLSSVVSNDE 180 RYEFLADYVP EKLKADVALE EWEKGMTDAG *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g011410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010475580.1	1e-151	PREDICTED: DNA polymerase epsilon subunit 4
TrEMBL	Q0WP19	1e-104	Q0WP19_ARATH; Uncharacterized protein At1g07980
STRING	XP_010475580.1	1e-150	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11190	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	3e-82	nuclear factor Y, subunit C10