PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g012470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 209aa    MW: 23545.9 Da    PI: 5.2686
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g012470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.9e-111393583
                    -..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3  5 ltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
                    lt  dv++++rl lp + +++        ++++++++ + d s+ s+ v+l  r+ s++y++++GW++F +a +Lk+gD++ + 
  Csa17g012470.1 13 LTDIDVSSKNRLGLPLDKVNNLiistgVPIPRQGIQVEIVDNSN-SYWVNL--RQDSNGYFIGSGWSSFKDARQLKAGDVIRLD 93
                    7789***************6669999855667999999999655.5559**..**************************98776 PP
2zf-CCCH253.4e-08158177625
                     -SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                     C+f+++tG C++G+rC++ H
  Csa17g012470.1 158 CPFHLKTGACRFGPRCSRVH 177
                     ******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-10496IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-13497IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.6429109IPR003340B3 DNA binding domain
SMARTSM010191.4E-69107IPR003340B3 DNA binding domain
CDDcd100175.49E-1013104No hitNo description
PfamPF023624.8E-91394IPR003340B3 DNA binding domain
PROSITE profilePS5010312.671152180IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-6158177IPR000571Zinc finger, CCCH-type
PRINTSPR018487.4E-12158177IPR009145U2 auxiliary factor small subunit
PRINTSPR018487.4E-12177197IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MNPSTNMMIE INLTDIDVSS KNRLGLPLDK VNNLIISTGV PIPRQGIQVE IVDNSNSYWV  60
NLRQDSNGYF IGSGWSSFKD ARQLKAGDVI RLDWQPQDYK FIFSMVLIVS WTIAYTISFC  120
LVCTLTQESK TLEMNNYENV SSAQQILENV VQEDKAHCPF HLKTGACRFG PRCSRVHFYP  180
SKSCTLLMKN MYNGLGIACE QDEGLEVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g012470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054899e-58AC005489.1 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1, complete sequence.
GenBankAK2266849e-58AK226684.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-54-F13.
GenBankCP0026849e-58CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475717.11e-71PREDICTED: B3 domain-containing protein At1g08985-like
SwissprotQ8GWU11e-39Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBLR0HES11e-35R0HES1_9BRAS; Uncharacterized protein
STRINGXP_010475717.14e-71(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.15e-42B3 family protein