PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g013860.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 601aa MW: 68456 Da PI: 7.3066

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g013860.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.4	6.4e-20	75	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + t+r fvC + g++ ++ ++ k +r+r ++r+gC+a l+++k + + +w vt + ++HnHel Csa17g013860.1 75 EFYSTFAKRCGFSIRRHRTEGKdGIGKGLTRRYFVCHRAGNTPVKTLSEGKPQRNRRSSRCGCQAYLRISKITelgSTEWLVTGFANHHNHELL 168 6************999887735667799**********999999*****************9989999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-16	75	168	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.5E-20	291	380	IPR018289	MULE transposase domain
Pfam	PF04434	2.3E-8	566	599	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	8.803	569	598	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0034	577	599	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence Send to blast
MTVVVQHPKI VLKMSDDAGQ MLLIYDDPSD QRSLSLDDAS SSEESPDGTT LSLEAVHDAI 60 PYNGQRFLTH DAAYEFYSTF AKRCGFSIRR HRTEGKDGIG KGLTRRYFVC HRAGNTPVKT 120 LSEGKPQRNR RSSRCGCQAY LRISKITELG STEWLVTGFA NHHNHELLEP NQVRFLPAYR 180 SISDADKSRI LMFSKTGISV QQMMKLLELE KCVEPGFLPF TEKDVRNLLQ SFKKLDPDDE 240 NIDFLRMCQS IKEKDPNFKF EFTLDANDKL ENIAWSYASS IQSYEIFGDA VVFDTTHRLS 300 AVEMPLGIWV GVNNYGVPCF FGCVLLREEN LRSWSWALQA FTGFMNGKAP QTILTDHNMC 360 LKEAIAGEMP TTKHALCIWM VVGKFPSWFN AGLGERYNDW KSEFYRLYHL ESVEEFELGW 420 RDMVNSFGLH TNRHINNLYA SRSMWSLPYL RSHFLAGMTL TGRSKAINAF IQRFLSAQTR 480 LAHFVEQVAV AVDFKDQATE QQTMQQNLQN ISLKTGAPME SHAASVLTPF AFSKLQEQLV 540 LAAHYASFQM DDGYLVRHHT KLDGGRKVYW VPQEGIISCS CQLFEFSGFL CRHALRVLST 600 G

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence Send to blast

MTVVVQHPKI VLKMSDDAGQ MLLIYDDPSD QRSLSLDDAS SSEESPDGTT LSLEAVHDAI  60
PYNGQRFLTH DAAYEFYSTF AKRCGFSIRR HRTEGKDGIG KGLTRRYFVC HRAGNTPVKT  120
LSEGKPQRNR RSSRCGCQAY LRISKITELG STEWLVTGFA NHHNHELLEP NQVRFLPAYR  180
SISDADKSRI LMFSKTGISV QQMMKLLELE KCVEPGFLPF TEKDVRNLLQ SFKKLDPDDE  240
NIDFLRMCQS IKEKDPNFKF EFTLDANDKL ENIAWSYASS IQSYEIFGDA VVFDTTHRLS  300
AVEMPLGIWV GVNNYGVPCF FGCVLLREEN LRSWSWALQA FTGFMNGKAP QTILTDHNMC  360
LKEAIAGEMP TTKHALCIWM VVGKFPSWFN AGLGERYNDW KSEFYRLYHL ESVEEFELGW  420
RDMVNSFGLH TNRHINNLYA SRSMWSLPYL RSHFLAGMTL TGRSKAINAF IQRFLSAQTR  480
LAHFVEQVAV AVDFKDQATE QQTMQQNLQN ISLKTGAPME SHAASVLTPF AFSKLQEQLV  540
LAAHYASFQM DDGYLVRHHT KLDGGRKVYW VPQEGIISCS CQLFEFSGFL CRHALRVLST  600
G

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g013860.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF424595	0.0	AF424595.1 Arabidopsis thaliana At1g10240/F14N23_12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019094383.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	R0IH94	0.0	R0IH94_9BRAS; Uncharacterized protein
STRING	XP_010480407.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]