PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g014150.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 155aa    MW: 17470 Da    PI: 8.6626
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g014150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.31e-1121123295
                     EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     +k lt sdv  +++l+lpk+ +e++           ++    +++++++d +    s++v+l+  +k+g+y+++kGW+   +++gL  gDf+ ++
  Csa17g014150.1  21 KKRLTDSDVCIKSQLCLPKQLMEQFivpemgndlvqKLA--PGVEVKVRDVDRinHSYTVTLK-LRKDGQYLFGKGWNLLKNSKGLIKGDFIGLY 112
                     588999****************99999999998764333..5678888887766699999995.566679************************* PP

                     E-SSSEE..EEE CS
              B3  84 ldgrsefelvvk 95 
                      d+  e+e+++k
  Csa17g014150.1 113 WDK-LEGEFKFK 123
                     654.55555665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-1315125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-1216121IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-1518123No hitNo description
SMARTSM010193.7E-920128IPR003340B3 DNA binding domain
PfamPF023628.2E-922123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MAHYVNLELS LSQYEDPWVL KKRLTDSDVC IKSQLCLPKQ LMEQFIVPEM GNDLVQKLAP  60
GVEVKVRDVD RINHSYTVTL KLRKDGQYLF GKGWNLLKNS KGLIKGDFIG LYWDKLEGEF  120
KFKHLKTQMP SSSSSSGKGE TSTQGNEGET NTQV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g014150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480415.11e-111PREDICTED: B3 domain-containing protein At1g10455-like
SwissprotQ9XIK59e-53Y1045_ARATH; B3 domain-containing protein At1g10455
TrEMBLA0A178W4P22e-50A0A178W4P2_ARATH; Uncharacterized protein
STRINGXP_010480415.11e-110(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1992934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.11e-10B3 family protein