PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g018630.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 349aa MW: 39641.1 Da PI: 6.1579

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g018630.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.4e-31	184	239	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+++LH+rF++a+++LGG+++AtPk+i+elmk++gLt+++vkSHLQkYRl+ Csa17g018630.2 184 KQRRCWSSQLHRRFLNALQHLGGPHVATPKQIRELMKIDGLTNDEVKSHLQKYRLH 239 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.525	181	241	IPR017930	Myb domain
SuperFamily	SSF46689	7.94E-17	183	242	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.3E-27	183	242	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-28	184	239	IPR006447	Myb domain, plants
Pfam	PF00249	6.3E-6	186	237	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MIKNLSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKREMPEMT 60 TENVYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE ELDDEHGNHD PDNDSEDKNT 120 KSDWLKSVQL WNQPDPLLPK EERLQQEMME TVKRDHENMR KDPMVNGGEG RKREAEKDVG 180 GGRKQRRCWS SQLHRRFLNA LQHLGGPHVA TPKQIRELMK IDGLTNDEVK SHLQKYRLHT 240 RRPRQTVPNN ENSQTQHFVV VGGLWVPQPD YSTGKTTGGV TTSSTTTTTG IYGAMAAPPP 300 PQWPSHSNFR PSIIAEEGSG SHSEEVVVVR CSSPAMSSST RNHYVKNH*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MIKNLSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKREMPEMT  60
TENVYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE ELDDEHGNHD PDNDSEDKNT  120
KSDWLKSVQL WNQPDPLLPK EERLQQEMME TVKRDHENMR KDPMVNGGEG RKREAEKDVG  180
GGRKQRRCWS SQLHRRFLNA LQHLGGPHVA TPKQIRELMK IDGLTNDEVK SHLQKYRLHT  240
RRPRQTVPNN ENSQTQHFVV VGGLWVPQPD YSTGKTTGGV TTSSTTTTTG IYGAMAAPPP  300
PQWPSHSNFR PSIIAEEGSG SHSEEVVVVR CSSPAMSSST RNHYVKNH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269\|PubMed:19341407, ECO:0000269\|PubMed:22545134, ECO:0000269\|PubMed:25723764}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g018630.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269\|PubMed:25723764, ECO:0000269\|PubMed:27419465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF367336	0.0	AF367336.1 Arabidopsis thaliana At1g13300/T6J4_6 mRNA, complete cds.
GenBank	AY124865	0.0	AY124865.1 Arabidopsis thaliana At1g13300/T6J4_6 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010476326.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9FX67	0.0	HRS1_ARATH; Transcription factor HRS1
TrEMBL	D7KQE4	0.0	D7KQE4_ARALL; Myb family transcription factor
STRING	XP_010476326.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13300.1	0.0	G2-like family protein

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Kiba T, et al. Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily. Plant Cell, 2018. 30(4): p. 925-945 [PMID:29622567]