PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g018750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 450aa    MW: 50768.4 Da    PI: 7.0162
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g018750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.11.8e-26128209286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e++ Li +rr m+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k +++++    s +++y++++e
  Csa17g018750.1 128 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKYHDRGN---GSAKMSYYKEIE 209
                     ********************************************************************84...566899***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-4118189IPR009057Homeodomain-like
PROSITE profilePS500908.026120184IPR017877Myb-like domain
SMARTSM007170.0062124186IPR001005SANT/Myb domain
CDDcd122038.43E-30126191No hitNo description
PfamPF138376.2E-20127210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
SKKSLFGSPH TSTNLCSGVV CVDGGGNKGT YISNCLSGDT AMFISDKSRP TDYYKDDTPN  60
SSTATTRDMM IDVTTNEAVS DLQPHHHNNH QNHNHHHLNQ SQPQQILLGE SSGEDHEVKA  120
PKKRAETWVQ DETRSLIMFR RGMDGLFNTS KSNKHLWEQI SSKMREKGFD RSPTMCTDKW  180
RNLLKEFKKA KYHDRGNGSA KMSYYKEIED ILRERSKKVT VTTQFNKSPS TPPPTTTAKV  240
DSFMQFSDKG FDDTSISFGS VEANGRPALN LERRLDHDGH PLAITAVDAV AANGVTPWNW  300
RENPGNGGDG HSQPFGGRVI TVKFGDYTRR IGVDGSAEAI KEAIRAAFGL RTRRAFWLED  360
EDQIVRCLDR DMPLGNYLLH LDDGLAIRVC HYDESNQLPV HSEEKIFYTE EDYRDFLNRR  420
GWTCLQVDGF RNIENMDDLQ PGAVYRGVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A5e-55122207186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g018750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHGT0.0L36806.1 Arabidopsis thaliana (clone pDGT1) GT-1 mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476341.10.0PREDICTED: trihelix transcription factor GT-1 isoform X1
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLR0IPF90.0R0IPF9_9BRAS; Uncharacterized protein
STRINGXP_010476341.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]