PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g021280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 400aa    MW: 45783.7 Da    PI: 5.845
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g021280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09350396347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       WT+eE   l ++vk++G+  Wk + +  +     R++ ++k++w+++
   Csa17g021280.1 350 FWTPEEVAALREGVKEFGKS-WKDVKNSNPvvlADRSEVDLKDKWRNL 396
                      5*****************88.************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.267343399IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-10345397IPR009057Homeodomain-like
SuperFamilySSF466891.06E-11345397IPR009057Homeodomain-like
SMARTSM007175.6E-7347399IPR001005SANT/Myb domain
CDDcd116607.27E-14349396No hitNo description
PfamPF002498.2E-8351396IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEKWVAEFFL RRQQNPRVYA SPLLSALKPV DSDDCVKLKI TSVLRDISNS LIRGTVDEGM  60
LDLLEILEKL MLQERSVIMG SLKSAYCWTA VECTHRFMWP VTASDGFFGD ALERIWKKRI  120
GMLKERESDL VSHELLKWES DLNEAFEEPE IYRKIRESNV RYNAISHLTQ LVKEQWALLG  180
CSSLESEARK RLLKRKDSPN ASRKRGNGYG RAGETTDKSN GENANDVEEV GGLEKHDGAV  240
KVNEQEQEHE PSLNKGEIAV ARELKDFLLE IQRLIDSSTR QEQEPDDAME QSNDVTPQND  300
EANRTEAEDS EGSSSSRRVR PHLPTPEPLN VSPLKKVRLE RPRPRRPMKF WTPEEVAALR  360
EGVKEFGKSW KDVKNSNPVV LADRSEVDLK DKWRNLFGR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g021280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273900.0AK227390.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-05-K06.
GenBankAY5195360.0AY519536.1 Arabidopsis thaliana MYB transcription factor (At1g15720) mRNA, complete cds.
GenBankBT0030850.0BT003085.1 Arabidopsis thaliana At1g15720 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF7H20.0AC034256.3 Sequence of BAC F7H2 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476660.20.0PREDICTED: uncharacterized protein LOC104755883, partial
TrEMBLA0A178W6H70.0A0A178W6H7_ARATH; TRFL5
STRINGXP_010476660.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.10.0TRF-like 5