PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g022100.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

LBD

Protein Properties

Length: 217aa MW: 24202.5 Da PI: 5.0054

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g022100.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	57.3	4.5e-18	111	165	46	100
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 k+l+e++r da++s+vyeA+ar++dPvyG+vg+i++lq+qle l+++la +++e Csa17g022100.1 111 FKELSENQRGDAVNSMVYEANARVQDPVYGCVGTISSLQRQLEALQTQLAFAQAE 165 68999*********************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	8.1E-16	112	163	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MAQEGDFCTT FIQYFVLQKI QREDWHLSLL LIRKHIDSCM CVVYVCIILD FEIGSSILFK 60 HEQRNYQLLS LQVHATNMVG AFVDCGAPCT SSSKLLFPVR SGRYQVAGGS FKELSENQRG 120 DAVNSMVYEA NARVQDPVYG CVGTISSLQR QLEALQTQLA FAQAELIQIR TLCRIDTKPS 180 PYTTSTVTFP TNKDFSSEVD MAFAYEDGSG DSLWSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-15	111	168	56	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-15	111	168	56	113	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g022100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16530.1	1e-58	ASYMMETRIC LEAVES 2-like 9