PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g022190.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 180aa    MW: 20908.8 Da    PI: 4.9138
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g022190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.4e-1854143198
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f k++++    +s+ + +p  f  e+     + ++t+ l d sgr W+v++  +k++++++lt GW++Fv++n+L++g  + F +d++++f  +v
  Csa17g022190.1  54 FMKAFIS--QKSSKSFAIPLGFN-EYfPD--PLPITVDLLDYSGRCWTVRM--KKRGEKVLLTLGWENFVRDNNLEDGKYLNFIYDSDRTF--YV 139
                     6677744..4455558******8.66243..499*****************..*******************************9876666..88 PP

                     EEE- CS
              B3  95 kvfr 98 
                      +f 
  Csa17g022190.1 140 VIFG 143
                     8886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2049147IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.08552145IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-2352147IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.3E-1854145IPR003340B3 DNA binding domain
PfamPF023622.7E-1654143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
ITNKRVGFKS VFSFHKLHIS LCSFLFHLWT LLVATFGLSL FSSMAAFISE EVRFMKAFIS  60
QKSSKSFAIP LGFNEYFPDP LPITVDLLDY SGRCWTVRMK KRGEKVLLTL GWENFVRDNN  120
LEDGKYLNFI YDSDRTFYVV IFGHDMCSEF RAFPQVVVDV DDYETGENDE EEEEEQKQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A7e-58421471104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g022190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476776.16e-98PREDICTED: B3 domain-containing protein At1g16640-like
SwissprotQ9FX777e-65Y1664_ARATH; B3 domain-containing protein At1g16640
TrEMBLD7KEH66e-66D7KEH6_ARALL; Transcriptional factor B3 family protein
STRINGXP_010476776.12e-97(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157511416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.12e-67B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]