PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g022670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family STAT
Protein Properties Length: 681aa    MW: 76758.4 Da    PI: 5.4224
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g022670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT176.93.1e-552243421117
            STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisq.LsskcdnrLfrikfeipklkk 94 
                     ldvvl+na+gqpv+kdv+vvasLlyadsg++vek++  eapLL+sy+Gvefs+ d+p++ll+G+asfklkisq Ls  +d+rLf+ikfeip++k+
  Csa17g022670.1 224 LDVVLTNAIGQPVHKDVKVVASLLYADSGTPVEKMSGFEAPLLVSYEGVEFSAADKPCNLLNGCASFKLKISQvLSPMSDERLFCIKFEIPEVKA 318
                     8************************************************************************67889***************98 PP

            STAT  95 .ypfleavskpirCisrsrntrss 117
                      ypfle+v+++irCi r+r++ + 
  Csa17g022670.1 319 nYPFLETVTNQIRCILRNRDSVTP 342
                     8******************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF133852.8E-626147No hitNo description
SuperFamilySSF498999.18E-930168IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:2.60.120.2003.1E-430145IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103382.93E-65575680No hitNo description
Gene3DG3DSA:3.30.505.103.7E-8583638IPR000980SH2 domain
SuperFamilySSF555501.57E-11583671IPR000980SH2 domain
PROSITE profilePS5000110.597586680IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
GFIMAGDCAI DTDKYSLLED FNVDVEVQSQ GFESFSLCFW VYLLDSTTYP STIIRQVHSD  60
MSVSAPFLVL DDKKKMMLLP LTLLHKEAPD PVNISSWTEV PNVSTIAEFP LQKWVHVGCE  120
VSRNYMRLYI CGELVGEQVL TSLMTNGTYF DCTRKMSLFS VGGDGYSVQG FIHCAEVLPS  180
YVPANYHYKK DPPLCLSVGK PSTSGIKLDE DGVWSIVGGT FCSLDVVLTN AIGQPVHKDV  240
KVVASLLYAD SGTPVEKMSG FEAPLLVSYE GVEFSAADKP CNLLNGCASF KLKISQVLSP  300
MSDERLFCIK FEIPEVKANY PFLETVTNQI RCILRNRDSV TPKRSNHIDY QLDGREQKLA  360
SSNETSDILQ STAPMKRIRL GEEKVSVSKN GNGTSMEWRP QAQNHDEEEE DNSSTDSENT  420
KIKDSAGFRR YTIPDSMIFK YCLANLTERS LLLKEITNNS SDEEVSKFAD QVSLYSGCSH  480
HSYQIKMARK LIAEGTNAWI LISRNYQHVH WDNVVIEIEE HFMRIAKCSS RSLTHQDFEL  540
LRRICGCHEY ITQENFEKMW CWLFPVASAI SRGLINGMWR SATPKWIEGF VTKEEAERSL  600
QNQEPGTFIL RFPASRSWPH PDAGSLVVTY VGRDLVIHDR LLTIDHMCDS SERYTDAKPL  660
QDMLLAEPEL SRLGRIVRGI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g022670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0461800.0BT046180.1 Arabidopsis thaliana unknown protein (At1g17040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476838.10.0PREDICTED: uncharacterized protein LOC104756028
SwissprotB5X5610.0SHA_ARATH; SH2 domain-containing protein A
TrEMBLR0IGD00.0R0IGD0_9BRAS; Uncharacterized protein
STRINGXP_010476838.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.10.0SH2 domain protein A
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]