PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g022850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 157aa    MW: 18624.9 Da    PI: 10.3004
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g022850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK69.25.7e-223176247
          RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47
                    +k++s e +s yF++ i++AAke++++lT+LK++CR++GI+RWPhR
  Csa17g022850.1 31 SKTLSKEIISLYFYMLITQAAKEVNIGLTLLKKRCRELGIQRWPHR 76
                    5899*****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.85612103IPR003035RWP-RK domain
PfamPF020422.0E-163376IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MLDLDLEKKS ETISTKKRRC REECVSSCSV SKTLSKEIIS LYFYMLITQA AKEVNIGLTL  60
LKKRCRELGI QRWPHRPAED GRGRKRRQAK KRFGKAREGE ETIEKLPDLK FEDKTKRLRQ  120
ACFKANHKWN LEEKTWHVHI HHIIIFFFLF LCFVCE*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g022850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0118092e-70AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBankCP0026842e-70CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501518.16e-60PREDICTED: protein RKD1-like
SwissprotQ9M9U91e-46RKD1_ARATH; Protein RKD1
TrEMBLR0IJY62e-49R0IJY6_9BRAS; Uncharacterized protein
STRINGXP_010501518.12e-59(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.12e-38RWP-RK domain-containing protein