PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g023270.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 198aa    MW: 21622.8 Da    PI: 10.2592
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g023270.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.3e-14556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g Wk I r         +R+  ++k++w+++
   Csa17g023270.2  5 KLKWTAEEEEALLAGVRKHGPGKWKNILRDPEfdgqlSNRSNIDLKDKWRNL 56
                     689***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.638162IPR017930Myb domain
SuperFamilySSF466891.22E-16358IPR009057Homeodomain-like
SMARTSM007179.2E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-14556IPR009057Homeodomain-like
PfamPF002498.9E-10556IPR001005SANT/Myb domain
CDDcd116602.94E-21756No hitNo description
SMARTSM005262.7E-15123188IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.3E-11124187IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.01125197IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467857.07E-13126187IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.8E-9127186IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGNQKLKWTA EEEEALLAGV RKHGPGKWKN ILRDPEFDGQ LSNRSNIDLK DKWRNLSVAP  60
GIQGSKDKIR TPKIKAAAFD LASAAAAATV NHIPNAIPSP VAKLIRKVSS ENIEEFCNIV  120
VDAKNVPRYD GMIFEALSAL TDVNGSDVSA IYNCIEQRHG APPNFRRMLS SRLRRLAAQG  180
KLEKVSHLKS VSLESLG*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g023270.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476906.11e-138PREDICTED: telomere repeat-binding factor 4-like isoform X2
SwissprotF4I7L11e-85TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLR0I3W91e-87R0I3W9_9BRAS; Uncharacterized protein
STRINGXP_010476905.11e-115(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.15e-87MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]