PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g024610.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 228aa    MW: 25970.7 Da    PI: 8.3585
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g024610.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.42.1e-2691141252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     +k++s e++s yF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk+ sl
  Csa17g024610.1  91 SKTLSKETISLYFYMPITQAAKELNIGLTLLKKRCRELGIQRWPHRKLMSL 141
                     5899********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.84872161IPR003035RWP-RK domain
PfamPF020421.9E-2193141IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
ELANLFFDLK DDFPPSAYSN NYLPSSSSFL ALPDLDPISI VSLDDLLSGC GSVSWTEEES  60
MLDLDLEKKS ETISTKKRRC REECVSSCSV SKTLSKETIS LYFYMPITQA AKELNIGLTL  120
LKKRCRELGI QRWPHRKLMS LQKLISNVKE LQKMEGEENE DKLRNALEKL EKEKETIEKL  180
PDLKFEDKTK RLRQACFKAN HKRKRRHGMS TSFTSSSSSS SVSGLSDS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g024610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0118091e-102AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBankCP0026841e-102CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480535.11e-149PREDICTED: protein RKD1
SwissprotQ9M9U91e-116RKD1_ARATH; Protein RKD1
TrEMBLD7KH701e-118D7KH70_ARALL; RWP-RK domain-containing protein (Fragment)
STRINGXP_010480535.11e-149(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.13e-88RWP-RK domain-containing protein