PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g024690.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 540aa MW: 59605.8 Da PI: 7.266

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g024690.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94	1.1e-29	239	298	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+Hnh+ Csa17g024690.1 239 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIAaSCPVRKQVQRCSEDMSILISTYEGTHNHP 298 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.6E-31	224	300	IPR003657	WRKY domain
SuperFamily	SSF118290	1.26E-26	232	300	IPR003657	WRKY domain
PROSITE profile	PS50811	28.529	234	300	IPR003657	WRKY domain
SMART	SM00774	1.1E-34	239	299	IPR003657	WRKY domain
Pfam	PF03106	6.3E-26	240	298	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MEKKDFLKST GHGAEENHEV MRKHDSSHDD SHEEHEQIIR SKLDLTKVEM EEAKEENRRL 60 KSSLSKIKKD FDILQTQYNQ LMVQHEEPKK FSPKGHRQDK DRDKDKVNER EELVSLSLGR 120 RSKSPVPSGS KMNKEENSKK IVEVGDEEKL NDYEKGSDHG LSVAFEYKDL SNPNEKFQTE 180 HNKETISLEI GDTNKSTSEN NFGFKNDEDD HDDQEELLPQ NLVKKTRVSV RSRCETPTMN 240 DGCQWRKYGQ KIAKGNPCPR AYYRCTIAAS CPVRKQVQRC SEDMSILIST YEGTHNHPLP 300 MSATAMASAT SAAASMLLSG ASSSSSVAAA DLHGLNFSLS GNITPKSKSP FLQTSSSSPS 360 SSGHPTITLD LTSSSSSQQP FISMLNRFNS PTGNVSRSNS YPSTNLNFSN NTNTLHNWSA 420 GGGIHSSQYR APYGNISTHQ QLPYQSIIQT RTVGSSFDPF GRSSSSSSSS HPTQTNHDHI 480 GIKNIMTHQV PSLPAETIKA ITTDPSFQSA LATALSSIIG GGDLKIDHKV TRNDAEKSP*

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MEKKDFLKST GHGAEENHEV MRKHDSSHDD SHEEHEQIIR SKLDLTKVEM EEAKEENRRL  60
KSSLSKIKKD FDILQTQYNQ LMVQHEEPKK FSPKGHRQDK DRDKDKVNER EELVSLSLGR  120
RSKSPVPSGS KMNKEENSKK IVEVGDEEKL NDYEKGSDHG LSVAFEYKDL SNPNEKFQTE  180
HNKETISLEI GDTNKSTSEN NFGFKNDEDD HDDQEELLPQ NLVKKTRVSV RSRCETPTMN  240
DGCQWRKYGQ KIAKGNPCPR AYYRCTIAAS CPVRKQVQRC SEDMSILIST YEGTHNHPLP  300
MSATAMASAT SAAASMLLSG ASSSSSVAAA DLHGLNFSLS GNITPKSKSP FLQTSSSSPS  360
SSGHPTITLD LTSSSSSQQP FISMLNRFNS PTGNVSRSNS YPSTNLNFSN NTNTLHNWSA  420
GGGIHSSQYR APYGNISTHQ QLPYQSIIQT RTVGSSFDPF GRSSSSSSSS HPTQTNHDHI  480
GIKNIMTHQV PSLPAETIKA ITTDPSFQSA LATALSSIIG GGDLKIDHKV TRNDAEKSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-20	226	300	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g024690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010477088.1	0.0	PREDICTED: probable WRKY transcription factor 61
Swissprot	Q8VWV6	0.0	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	A0A178WBT0	0.0	A0A178WBT0_ARATH; WRKY61
STRING	XP_010477088.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12663	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	0.0	WRKY DNA-binding protein 61

Publications ? help Back to Top
Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]