PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g025310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 469aa    MW: 52312.3 Da    PI: 5.3376
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g025310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.32.9e-07154214161
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                     e+e +r rr   NRe+Ar   +R++a +eeL +k++ L+ eN+ L+ e +   ke ++l++
  Csa17g025310.1 154 EREERRIRRILANRESARQTIRRRQAMCEELSKKAADLTYENENLRREKDWALKEFQSLET 214
                     78899*****************************************998888888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.2E-9154218IPR004827Basic-leucine zipper domain
PfamPF001706.7E-7154216IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.036156219IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.63E-6158213No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-6158223No hitNo description
CDDcd147021.21E-12164210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MELEPISSCC SSSSSSGEET AAADMTEMEA AEALADLAQL AIMREQVFEQ ASSWGSKGKR  60
VRKRAKTESP PSDSLLKPPD SETLPTPDLA EERLVKEEED EEEEEVQPIT KELTKAPVKS  120
EMNGETPKPN LVSTIRCSRS NGCGRSRQNL SEAEREERRI RRILANRESA RQTIRRRQAM  180
CEELSKKAAD LTYENENLRR EKDWALKEFQ SLETMNKHLK EQVAKSVKPD TKEPEEPPKP  240
SQVEMSTSST PIYFYNQNPY QLFCWPHVTQ STNPVIPPLE FATSGGASAK TMTPQEHENP  300
ADDNGQKTHF YVVPCPWFLP PPDSNGVSFG IQDTQRGTFS NGHHIDDSSA RPLEVTKTPW  360
PHLPTRIKEE DSGSPETRPL YDLNESATEV LSEGGEGFPV TQQAFSLKHE DISETTNGVT  420
PMPPGHHVLI SLPGKNQGSL AAAEARKRRK ELTRLKNLHG RQCRMQVG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445450RKRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g025310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0998750.0AY099875.1 Arabidopsis thaliana unknown protein (At1g19490) mRNA, complete cds.
GenBankBT0003190.0BT000319.1 Arabidopsis thaliana unknown protein (At1g19490) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477168.10.0PREDICTED: uncharacterized protein LOC104756295
TrEMBLR0II410.0R0II41_9BRAS; Uncharacterized protein
STRINGXP_010477168.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112112428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.10.0bZIP family protein