PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g025670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 465aa    MW: 50835.6 Da    PI: 5.1448
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g025670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.6e-06412434426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C++f  t  C++G++C + H+
  Csa17g025670.1 412 KPCMYFNSTRGCRHGSNCLYQHD 434
                     69********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.343408436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4412435IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MVKRYPLNRD SNAVICNVFA DGKYFGKIAR GWIRSPANFL IGKGEEEDTT QRNITILQII  60
SSLFLFLWIV RLFISEDSPS QVGSESQDHL QAKSSFASHP GDDNLPPGFG GPLSANEPQI  120
RLSDIAVIKW KCSVRILLDE EWRVVAGDES KEVEAQNQRE LRVLEAFYPG ASSIPSNPSV  180
PADVENSHYD DQQTIVIPIL PVEDDDIATD SASDLPTQSG TNVGTEPSIP NQNTSTSSIL  240
PSGSDIMAAL SAISNIKEQG SSMIDQDLLI KILSNPKLVE NLVANSGSAG SVSSNASVLY  300
PSSTHEANGV VTTAPASNGQ FYPQPMVTQC PPMVYPPPAP SDQHNYGAPP ARDASYYKNL  360
IQQHGGERQE TPPVQPHLGF RYNLPPGGPN QEMINSNNNN QRPRDSKPKI MKPCMYFNST  420
RGCRHGSNCL YQHDATPYQP RNPNNGNINT SEMQSAKRMR FDRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g025670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2215790.0AK221579.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-83-G10.
GenBankBT0255570.0BT025557.1 Arabidopsis thaliana At1g19860 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477211.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
SwissprotQ56XU40.0C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLR0IPE40.0R0IPE4_9BRAS; Uncharacterized protein
STRINGXP_010477211.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56141418
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]