PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g029500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18753 Da    PI: 9.931
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g029500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.42.1e-141150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i ++  r vtf kR+ g+lKK +EL +LC+  ++ ii+s+
  Csa17g029500.1 11 IADNATRRVTFRKRKDGLLKKINELTILCGLPACAIIYSE 50
                    77888999*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.493150IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-21294IPR002100Transcription factor, MADS-box
CDDcd002667.62E-21285No hitNo description
PRINTSPR004041.0E-7323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGRRKVTHQL IADNATRRVT FRKRKDGLLK KINELTILCG LPACAIIYSE YKDGPELWPN  60
VNEVRSLLDR LSELPVEKQT KYMMDQKDLM KKMIQDAEKR LEKEKWYTRA MKLGIMASTS  120
DLTTDTDCSE ELAKAAEVVD KKLKAIRERI KAVEAGAPII KRD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHQLIADNATRRVTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g029500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065511e-167AC006551.6 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete sequence.
GenBankAY1412501e-167AY141250.1 Arabidopsis thaliana MADS-box protein AGL87 mRNA, complete cds.
GenBankCP0026841e-167CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460014.11e-114PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLR0GZP31e-108R0GZP3_9BRAS; Uncharacterized protein
STRINGXP_010460014.11e-114(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.23e-99AGAMOUS-like 87