PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g034060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 371aa    MW: 41525.8 Da    PI: 7.1248
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g034060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.23.2e-37107166261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     ++k+l+cprC+s ntkfCyynny+++qPr+fC++C+ryWt+GG++r vPvG+grrknk +
  Csa17g034060.1 107 PDKILPCPRCNSGNTKFCYYNNYNVNQPRHFCRNCQRYWTAGGSMRTVPVGSGRRKNKGW 166
                     7899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-28107164IPR003851Zinc finger, Dof-type
PfamPF027011.5E-30109164IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.369111165IPR003851Zinc finger, Dof-type
PROSITE patternPS013610113149IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSSKIGMSEV RDTPVKLFGW TITSVSHDPL SSSSPVLPDS SSSSSSSPSL GPHKMHDQSA  60
TDNTSLKISL DLDKESKETS ENSDDQHSEI TTTTTSEEEK SAELKKPDKI LPCPRCNSGN  120
TKFCYYNNYN VNQPRHFCRN CQRYWTAGGS MRTVPVGSGR RKNKGWVSSD HYLHITSDDS  180
DNYNSSSTKI LSFESSDSLV TENTKHQSRD AKINADFVSQ EVNNFQGFPP PQATSPVSPL  240
LPYQYPPNPS FYHMPVYWGC VVPVWSTLEP STCLGKRTRD EASHETARDA SIRPRLVSES  300
QSINNEATKA TENHLWYPVS MKHEKTEQYN FFNNGSERKS SNERFVPKTY LSLQANPAAM  360
ARSMNFRESM *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g034060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477811.10.0PREDICTED: dof zinc finger protein DOF1.3-like
SwissprotQ9LQX40.0DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBLR0ILX50.0R0ILX5_9BRAS; Uncharacterized protein
STRINGXP_010477811.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140821624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26790.11e-174Dof family protein