PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g034300.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 471aa    MW: 52461.5 Da    PI: 9.0734
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g034300.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00078414436123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  Csa17g034300.1 414 HECPICFRVFKSGQALGGHKRSH 436
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.89E-7536No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.801936IPR007087Zinc finger, C2H2
PfamPF139121.2E-6933IPR007087Zinc finger, C2H2
SMARTSM003550.21931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.24295122IPR007087Zinc finger, C2H2
SMARTSM003550.4195117IPR015880Zinc finger, C2H2-like
PfamPF139120.002296119IPR007087Zinc finger, C2H2
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
SuperFamilySSF576671.27E-696117No hitNo description
SuperFamilySSF576671.27E-6409436No hitNo description
PROSITE profilePS501578.974414436IPR007087Zinc finger, C2H2
PfamPF139124.0E-10414436IPR007087Zinc finger, C2H2
SMARTSM003550.14414436IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280416436IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEQFKERKFE CKYCSKSFAC GKSLGGHIRT HMTENSVDSD DEDDESNKLK MVDDNGGQSS  60
YGLRENPKKN KRFVDHRQIM TLKHQQQQPQ HHQLLCCREC GKGFVSSKAL CGHMACHSER  120
EKIVMDSQSD TEASSSPIRR RSKRVVVKHH HKAAFVVGDD NGTMNQFNSA YSDASEIEPE  180
QKEMALSLMM LSMDSGFKKG HNLVVNSFAE SSDNNSVILE TKSSSGERLK MVNVNNVEAF  240
CNKNKLGVDN KTRSGEDNGG VLYDSDNSDS GYFRNGPKKL YSDVSVDGFT RNSGFDNKAV  300
MGSGSGFNSS PTKQDKDMNR FRKEWYKEGG SGSGGSGSGR SSTKYDLRKS KRGFPSYGRK  360
KIKYEFSESV YDSGEHSLET DSCADTNRTI KIHHSKSPMA KKASGTVKKK SKGHECPICF  420
RVFKSGQALG GHKRSHFIGN QEHRTLVIQH QVAHEMHTLI DLNLPAPIDE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g034300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K70.0AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477841.10.0PREDICTED: uncharacterized protein LOC104756882
TrEMBLR0GTA20.0R0GTA2_9BRAS; Uncharacterized protein
STRINGXP_010477841.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein