PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g034320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 419aa    MW: 47079.8 Da    PI: 9.4551
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g034320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019931123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C k+F++   L  Hir H
  Csa17g034320.1  9 FVCKFCYKTFPSGKALGGHIRIH 31
                    89*******************99 PP
2zf-C2H211.90.00067363385123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  Csa17g034320.1 363 HECPICFRVFKSGQALGGHKRSH 385
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-5534IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.32E-7781No hitNo description
PROSITE profilePS5015711.51936IPR007087Zinc finger, C2H2
PfamPF139124.0E-7929IPR007087Zinc finger, C2H2
SMARTSM003550.057931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003554.25981IPR015880Zinc finger, C2H2-like
PfamPF139120.0016083IPR007087Zinc finger, C2H2
PROSITE patternPS0002806081IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307122149IPR007087Zinc finger, C2H2
SMARTSM003550.027122144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
PfamPF139121.0E-4124146IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388363390IPR007087Zinc finger, C2H2
PfamPF139121.5E-10363386IPR007087Zinc finger, C2H2
SMARTSM003550.14363385IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280365385IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDEGKEKKFV CKFCYKTFPS GKALGGHIRI HSNENSVDSD RYNRVKKKKR LVDQREKQVC  60
CKRCRKKFVS LKALRAHMVC HCEGEKMLQG SQSDTDESET SSAPLRKRSR RVMMAHKHKQ  120
QFFCKICDKG FASLKAISAH MACHSEGEKM LIDDSQSDDT DSETSSALKR SKRVMRRSNS  180
ESFSNGSLSF DSDIDQEVGE GAYLLMVLSR GSSFKKRCNF VMNSLGESSE NNSGVVETKS  240
SSGEELKILN VKSQVIETDD QLRSANDNGV SLCDSDGSDS DYFMNGPKKS DSDISVEGSL  300
RNTLHRFRNS GKKGSLYELS KSKRDLCSYE TDSGADTNRK IHRYRDSKSP VVKKAGGEKK  360
TSHECPICFR VFKSGQALGG HKRSHSYENQ EHNQVSEIRN QINLNAPASY IDQWNKRT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g034320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477843.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLR0ISX20.0R0ISX2_9BRAS; Uncharacterized protein
STRINGXP_010477843.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.19e-99C2H2-like zinc finger protein