PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g034610.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 29710.7 Da    PI: 8.3273
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g034610.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.91.8e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr+g+lKKA+E+SvLCdaev++i+fs++gkl+eyss
  Csa17g034610.1  9 KRIENKINRQVTFSKRRAGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSS 59
                    79***********************************************96 PP
2K-box100.13e-33841768100
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + + + + +++ e+++Lk++ie L+r+qRh+lGedLes++lkeLq+LeqqL+ +lk+iRs+Kn+l++e++++l +keke+q+en +L+k+++e
  Csa17g034610.1  84 DSHVNAQTNWSMEHSRLKAKIELLERNQRHYLGEDLESMTLKELQNLEQQLDIALKHIRSRKNHLMYESLNHLHRKEKEIQDENSMLTKQIKE 176
                     36677889**********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.113161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-39160IPR002100Transcription factor, MADS-box
CDDcd002652.96E-42279No hitNo description
SuperFamilySSF554555.76E-34286IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-2985174IPR002487Transcription factor, K-box
PROSITE profilePS5129716.75890180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRAGLLK KAQEISVLCD AEVSLIVFSH KGKLFEYSSE  60
SCMEKVLERY ERYSYAERQL TAPDSHVNAQ TNWSMEHSRL KAKIELLERN QRHYLGEDLE  120
SMTLKELQNL EQQLDIALKH IRSRKNHLMY ESLNHLHRKE KEIQDENSML TKQIKERENI  180
LRTQQNQWEQ QNQNHDVPPP QQFQTPHPYM ISHQTSPFLN MGGMYQGQDQ SAMGRNSLDL  240
TLEPVYNCNL GC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-21174173MEF2 CHIMERA
6byy_B7e-21174173MEF2 CHIMERA
6byy_C7e-21174173MEF2 CHIMERA
6byy_D7e-21174173MEF2 CHIMERA
6bz1_A7e-21174173MEF2 CHIMERA
6bz1_B7e-21174173MEF2 CHIMERA
6bz1_C7e-21174173MEF2 CHIMERA
6bz1_D7e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1. Positively regulates the APETALA1 and LEAFY expression. {ECO:0000269|PubMed:10648231, ECO:0000269|Ref.6}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g034610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934770.0AB493477.1 Arabidopsis thaliana At1g26310 mRNA for hypothetical protein, partial cds, clone: RAAt1g26310.
GenBankATHDBD0.0L36925.1 Arabidopsis thaliana (clone pSK112) CAL gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477869.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotQ390811e-156CAL_ARATH; Transcription factor CAULIFLOWER
TrEMBLR0I5P31e-164R0I5P3_9BRAS; Uncharacterized protein
STRINGXP_010477869.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.11e-154MIKC_MADS family protein